View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20276_low_7 (Length: 265)
Name: NF20276_low_7
Description: NF20276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20276_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 51146644 - 51146391
Alignment:
| Q |
1 |
cgataaagtggcacttctggtggtgaagaattttttgaaggagaagcttgaggtcccccatcttcagtttctaagaatccatctgttgtgggtgcaacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51146644 |
cgataaagtggcacttctggtggtgaagaattttttgaaggagacgcttgaggtcccccatcttcagtttctaagaatccatctgttgtgggtgcaacat |
51146545 |
T |
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| Q |
101 |
aagatgctgagaaagagtgacgaccgctgtttccagctgacccttggcttattgatcttaaggaaaaagatctctgactcgattgtcttccagaatgcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51146544 |
aagatgctgagaaagagtgacgaccgctgtttccagctgacccttggcttattgatcttaaggaaaaagatctctgactcgattgtcttccagaatgcac |
51146445 |
T |
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| Q |
201 |
tatactgattgacttgttttcgtcatttgcatcattttgctctgacctcttcat |
254 |
Q |
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||||||| ||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51146444 |
tatactgtttggcttgtttttgtcatttgcatcattttgctctgacctcttcat |
51146391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 51157783 - 51157530
Alignment:
| Q |
1 |
cgataaagtggcacttctggtggtgaagaattttttgaaggagaagcttgaggtcccccatcttcagtttctaagaatccatctgttgtgggtgcaacat |
100 |
Q |
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||||||||||||||||| |||||||||||| | | |||||||||||||||||||| || ||| ||||||||||||| |||||||||| ||||||||||| |
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| T |
51157783 |
cgataaagtggcacttccggtggtgaagaaactgtcgaaggagaagcttgaggtccaccgtctgcagtttctaagaagccatctgttgcgggtgcaacat |
51157684 |
T |
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| Q |
101 |
aagatgctgagaaagagtgacgaccgctgtttccagctgacccttggcttattgatcttaaggaaaaagatctctgactcgattgtcttccagaatgcac |
200 |
Q |
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| T |
51157683 |
atgatgctgagaaagagtgacgaccgctgtttccagatgacccttggcttatagatcttaaggaaaaagatctctgactcgattgtcttccagaatgcac |
51157584 |
T |
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| Q |
201 |
tatactgattgacttgttttcgtcatttgcatcattttgctctgacctcttcat |
254 |
Q |
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||||||| |||||||||||| |||||||||||||| || ||||| | |||||| |
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| T |
51157583 |
tatactgtttgacttgtttttatcatttgcatcattctgttctgaacccttcat |
51157530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 29936387 - 29936640
Alignment:
| Q |
1 |
cgataaagtggcacttctggtggtgaagaattttttgaaggagaagcttgaggtcccccatcttcagtttctaagaatccatctgttgtgggtgcaacat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| | ||||| |||||||||||||||| |||||| |||| |||||||| |||||||||||||||||| || |
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| T |
29936387 |
cgataaagtggcacttctggtggtgaagaaactgttgaaagagaagcttgaggtccaccatctgcagtctctaagaagccatctgttgtgggtgcaccac |
29936486 |
T |
|
| Q |
101 |
aagatgctgagaaagagtgacgaccgctgtttccagctgacccttggcttattgatcttaaggaaaaagatctctgactcgattgtcttccagaatgcac |
200 |
Q |
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| |||||||| |||||||||||||| |||||||||| |||| |||| ||||| ||||| |||| |||||| | | ||| ||| || || |||| ||| |
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| T |
29936487 |
atgatgctgaaaaagagtgacgaccactgtttccagatgacacttgccttatgaatcttgaggataaagatatttcacttgatcgtttttcagatagcat |
29936586 |
T |
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| Q |
201 |
tatactgattgacttgttttcgtcatttgcatcattttgctctgacctcttcat |
254 |
Q |
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||||||| |||| || ||| |||||| ||| ||||||| ||||||| |||||| |
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| T |
29936587 |
tatactgtttgatttatttgagtcattggcaacattttgttctgaccccttcat |
29936640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 51200577 - 51200342
Alignment:
| Q |
1 |
cgataaagtggcacttctggtggtgaagaattttttgaaggagaagcttgaggtcccccatcttcagtttctaagaatccatctgtt---gtgggtgcaa |
97 |
Q |
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||||||||||| |||||||||||||||||| ||||||||| | |||| ||||| |||||| || ||||| |||| ||| ||| | || || ||| |
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| T |
51200577 |
cgataaagtggaacttctggtggtgaagaaaccgttgaaggaggaacttgtggtccaccatctgcaatttctgagaagccaactggtacagttggcacaa |
51200478 |
T |
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| Q |
98 |
cataagatgctgagaaagagtgacgaccgctgtt------tccagctgacccttggcttattgatcttaaggaaaaagatctctgactcgattgtcttcc |
191 |
Q |
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||| ||||||||||| ||||||||||||||||| ||||| |||| ||||||||| || ||| |||| | |||||| ||||||||| ||||| | |
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| T |
51200477 |
catgtgatgctgagaatgagtgacgaccgctgttcccacctccagatgacacttggcttaaagaccttgaggagagagatctttgactcgatcgtctttc |
51200378 |
T |
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| Q |
192 |
agaatgcactatactgattgacttgttttcgtcatt |
227 |
Q |
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||| ||||||||||| |||||||||||| |||||| |
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| T |
51200377 |
agatagcactatactgtttgacttgtttttgtcatt |
51200342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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