View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20276_low_8 (Length: 254)
Name: NF20276_low_8
Description: NF20276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20276_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 35170973 - 35171203
Alignment:
| Q |
8 |
tgagatgaaaacagcaccaactacacctgcccaattaacataattgatttggctaagaactgaaactgattccaattcatcacaaacaataatccctctt |
107 |
Q |
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| T |
35170973 |
tgagataaaaacagcaccaactacacctgcccaattaacataattgatttggctaagaactgaaactgattccaattcatcacaaacaataatccctctt |
35171072 |
T |
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| Q |
108 |
gttgcagctccacttaaaagactatatgaatcgcacgatgataaagttttgttgtaaacaagttgaagattttcaactatagcattagtagcaggaaaca |
207 |
Q |
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| T |
35171073 |
gttgcagctccacttaaaagactatatgaatcgcacgatgataaagttttgttgtaaacaagttgaagattttcaactatagcattagtagcaggaaaca |
35171172 |
T |
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| Q |
208 |
aagtccaaccaacaatagtttcaccacttcc |
238 |
Q |
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| T |
35171173 |
aagtccaaccaacaatagtttcaccacttcc |
35171203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 30099518 - 30099449
Alignment:
| Q |
147 |
gataaagttttgttgtaaacaagttgaagattttcaactatagcattagtagcaggaaacaaagtccaaccaa |
219 |
Q |
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|||||||| || |||||||||||| ||| ||||||||||||||||| | || ||||||||||||||||||| |
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| T |
30099518 |
gataaagtgttattgtaaacaagtagaacattttcaactatagcat---ttgctggaaacaaagtccaaccaa |
30099449 |
T |
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