View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20277_high_2 (Length: 223)
Name: NF20277_high_2
Description: NF20277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20277_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 47907736 - 47907933
Alignment:
| Q |
19 |
gtttcagatacatttctgttggaaagtacactgtcaatggaaaaaaggatatggctcctagcaatcccacaatgctattgaagaatggtaatatgatagc |
118 |
Q |
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| T |
47907736 |
gtttcagatacatttctgttggaaagtacactgtcaatggaaaaaaggatatggctcctagcaatcccacaatgctattgaagaatggtaatatgatagc |
47907835 |
T |
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| Q |
119 |
aatcactgttgtgaatatcacatacattgtcctccaaattaacctaaacatattcattctccatatgccaactaatggaatgtttacttgatattctt |
216 |
Q |
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| T |
47907836 |
aatcactgtcgtgaatatcacatacattgtcctccaaattaacctaaacatattcattctccatatgccaactaatggaatgtttacatgatattctt |
47907933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 47916194 - 47916383
Alignment:
| Q |
27 |
tacatttctgttggaaagtacactgtcaatggaaaaaaggatatggctcctagcaatcccacaatgctattgaagaatggtaatatgatagcaatcactg |
126 |
Q |
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| T |
47916194 |
tacatctctgttggaaagtacactgtcaagggaaagaacgatatggctcctagcaaacccacaacgttgttgaagaatggtaatatcatagcaatcaatg |
47916293 |
T |
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| Q |
127 |
ttgtgaatatcacatacattgtcctccaaattaacctaaacatattcattctccatatgccaactaatggaatgtttacttgatattctt |
216 |
Q |
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| T |
47916294 |
ttgtgattatcacataaattgtcctccatgtcaacctgaacatgttcattctccatatgccaacaaatggaattcttacatcatattctt |
47916383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 47901500 - 47901689
Alignment:
| Q |
27 |
tacatttctgttggaaagtacactgtcaatggaaaaaaggatatggctcctagcaatcccacaatgctattgaagaatggtaatatgatagcaatcactg |
126 |
Q |
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| T |
47901500 |
tacatctctattggaaagtacactgtcaaaggaaagaatgaaatagctcctaacaaacccacaacgctgttgaagaatggaaatatcatagcaatcactg |
47901599 |
T |
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| Q |
127 |
ttgtgaatatcacatacattgtcctccaaattaacctaaacatattcattctccatatgccaactaatggaatgtttacttgatattctt |
216 |
Q |
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| T |
47901600 |
ttgtgaatatcacatataatgtcctccatatcaccctgaacatgttcattctccatgtgccaaccaatggaatttttacataatattctt |
47901689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 47922618 - 47922815
Alignment:
| Q |
19 |
gtttcagatacatttctgttggaaagtacactgtcaatggaaaaaaggatatggctcctagcaatcccacaatgctattgaagaatggtaatatgatagc |
118 |
Q |
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||||||| ||||| ||| ||||||||||||| ||||| ||||| || || |||||||||| ||| || |||||| | ||||| ||||| ||||| ||||| |
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| T |
47922618 |
gtttcaggtacatctctattggaaagtacacggtcaagggaaagaacgacatggctcctaacaaaccaacaatgttgttgaaaaatggaaatatcatagc |
47922717 |
T |
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| Q |
119 |
aatcactgttgtgaatatcacatacattgtcctccaaattaacctaaacatattcattctccatatgccaactaatggaatgtttacttgatattctt |
216 |
Q |
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| T |
47922718 |
aatcaatgttgtaattatcacatataatgtcctccatatcaccctgaacatgttcattctccatgtgccaaccaatggaattcttacatcatattctt |
47922815 |
T |
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