View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20277_low_2 (Length: 286)

Name: NF20277_low_2
Description: NF20277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20277_low_2
NF20277_low_2
[»] chr3 (16 HSPs)
chr3 (9-268)||(27234606-27234865)
chr3 (111-222)||(786454-786564)
chr3 (169-222)||(9769574-9769627)
chr3 (169-220)||(21247232-21247283)
chr3 (184-223)||(44115429-44115468)
chr3 (179-222)||(50003302-50003345)
chr3 (19-88)||(786344-786413)
chr3 (184-221)||(44116767-44116804)
chr3 (184-224)||(2764173-2764213)
chr3 (178-222)||(9776850-9776894)
chr3 (52-88)||(34901794-34901830)
chr3 (184-223)||(5409330-5409369)
chr3 (184-223)||(27226623-27226662)
chr3 (98-152)||(19622918-19622972)
chr3 (179-221)||(21248336-21248378)
chr3 (184-228)||(17116195-17116239)
[»] chr2 (9 HSPs)
chr2 (109-223)||(36422731-36422845)
chr2 (31-86)||(4701404-4701459)
chr2 (20-88)||(7982454-7982522)
chr2 (162-221)||(45047361-45047420)
chr2 (169-223)||(18343959-18344013)
chr2 (52-88)||(41295247-41295283)
chr2 (97-152)||(8537075-8537130)
chr2 (168-221)||(1409650-1409703)
chr2 (178-219)||(7780723-7780764)
[»] chr7 (22 HSPs)
chr7 (108-223)||(44113422-44113536)
chr7 (18-88)||(4168753-4168823)
chr7 (169-229)||(8661670-8661730)
chr7 (20-88)||(38407355-38407423)
chr7 (108-223)||(49162230-49162344)
chr7 (178-221)||(16955687-16955730)
chr7 (184-218)||(25734766-25734800)
chr7 (184-221)||(24653752-24653789)
chr7 (178-223)||(40322314-40322359)
chr7 (20-88)||(4858250-4858318)
chr7 (16-88)||(14107974-14108046)
chr7 (16-88)||(14417931-14418003)
chr7 (20-88)||(40926425-40926493)
chr7 (179-222)||(36584984-36585027)
chr7 (179-222)||(42521338-42521381)
chr7 (184-218)||(25742860-25742894)
chr7 (179-221)||(35045973-35046015)
chr7 (184-222)||(43703045-43703083)
chr7 (184-229)||(19217619-19217664)
chr7 (162-223)||(19219043-19219104)
chr7 (108-152)||(38408283-38408327)
chr7 (179-223)||(43704531-43704575)
[»] chr1 (15 HSPs)
chr1 (108-222)||(9415618-9415731)
chr1 (97-152)||(22169216-22169271)
chr1 (170-219)||(7814880-7814929)
chr1 (9-88)||(44978561-44978640)
chr1 (18-88)||(52741630-52741701)
chr1 (164-222)||(46127783-46127841)
chr1 (184-222)||(51089895-51089933)
chr1 (47-88)||(27690562-27690603)
chr1 (162-223)||(51694561-51694622)
chr1 (178-221)||(18656755-18656798)
chr1 (184-222)||(51088528-51088566)
chr1 (47-88)||(30550399-30550440)
chr1 (4-88)||(9416987-9417071)
chr1 (52-88)||(37623392-37623428)
chr1 (184-228)||(52086620-52086664)
[»] chr4 (5 HSPs)
chr4 (26-88)||(11113884-11113946)
chr4 (178-218)||(4373375-4373415)
chr4 (16-88)||(39591083-39591155)
chr4 (162-220)||(53150398-53150456)
chr4 (184-221)||(5574200-5574237)
[»] chr5 (9 HSPs)
chr5 (169-221)||(14210138-14210190)
chr5 (103-152)||(2166174-2166223)
chr5 (184-223)||(25213117-25213156)
chr5 (184-223)||(25277269-25277308)
chr5 (108-223)||(41906407-41906522)
chr5 (48-88)||(7427895-7427935)
chr5 (184-222)||(1010828-1010866)
chr5 (169-223)||(14212282-14212336)
chr5 (98-144)||(15509266-15509312)
[»] chr8 (17 HSPs)
chr8 (18-88)||(41521459-41521529)
chr8 (27-88)||(31872717-31872778)
chr8 (179-223)||(41767243-41767287)
chr8 (9-88)||(10053639-10053718)
chr8 (184-232)||(20308912-20308960)
chr8 (184-232)||(21095545-21095593)
chr8 (105-152)||(2419938-2419985)
chr8 (97-152)||(21670127-21670182)
chr8 (97-152)||(31872802-31872857)
chr8 (180-222)||(41766116-41766158)
chr8 (27-88)||(2420017-2420078)
chr8 (184-221)||(38665947-38665984)
chr8 (173-218)||(40250045-40250090)
chr8 (162-223)||(43416030-43416091)
chr8 (162-203)||(44607383-44607424)
chr8 (108-152)||(13360416-13360460)
chr8 (179-223)||(43414374-43414418)
[»] scaffold0025 (1 HSPs)
scaffold0025 (18-88)||(54733-54803)
[»] chr6 (8 HSPs)
chr6 (169-218)||(13507241-13507290)
chr6 (184-221)||(18230317-18230354)
chr6 (162-218)||(13504528-13504584)
chr6 (20-88)||(33807831-33807899)
chr6 (162-221)||(9102717-9102776)
chr6 (162-221)||(28931176-28931235)
chr6 (179-222)||(24318143-24318186)
chr6 (188-216)||(13281485-13281513)
[»] scaffold0081 (1 HSPs)
scaffold0081 (162-221)||(43067-43126)
[»] scaffold0035 (1 HSPs)
scaffold0035 (184-221)||(22550-22587)
[»] scaffold0024 (1 HSPs)
scaffold0024 (48-88)||(72920-72960)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 27234606 - 27234865
Alignment:
Q  9 agaagcaaaggaaaaacattagatatgggtggtttaccataatatactatggatctgcaatctaacggttataatcatatcnnnnnnnctaacggcgaag 108  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||       |||||||||| |    
T  27234606 agaagaaaaggaaaaacattagatatgggtggtttaccataatatactatggacctgcaatctaacggttataatcatatcaaaaaaactaacggcgagg 27234705  T
Q  109 accaaaataggtaacggcagaatacatgagggaccagtttgagatgnnnnnnnagttaaaggaccattgtgaaataaagaattaagttaagggaccggat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||    
T  27234706 accaaaataggtaacggcagaatacatgagggaccagtttgagacatttttttagttaaaggaccattgtgaaataaagaattaagttaagggaccggat 27234805  T
Q  209 gatcaattaagcctagaaaatttgttgtttgccaacaatattcatccctagacttcgttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27234806 gatcaattaagcctagaaaatttgttgtttgccaacaatattcatccctagacttcgttc 27234865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 222
Target Start/End: Original strand, 786454 - 786564
Alignment:
Q  111 caaaataggtaacggcagaatacatgagggaccagtttgagatgnnnnnnnagttaaaggaccattgtgaaataaagaattaagttaagggaccggatga 210  Q
    |||||||| |||||||||||||||| ||||||||  |||||| |       |||||| ||| |||| |||||||||||||||||||||||| | | ||||    
T  786454 caaaatagataacggcagaatacataagggaccacattgagaagtttttt-agttaagggatcattatgaaataaagaattaagttaaggggctgaatga 786552  T
Q  211 tcaattaagcct 222  Q
    | ||||||||||    
T  786553 ttaattaagcct 786564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 9769574 - 9769627
Alignment:
Q  169 ggaccattgtgaaataaagaattaagttaagggaccggatgatcaattaagcct 222  Q
    |||||||| | ||||||||||||||||||||||||||| || ||||||||||||    
T  9769574 ggaccattttaaaataaagaattaagttaagggaccgggtggtcaattaagcct 9769627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 21247283 - 21247232
Alignment:
Q  169 ggaccattgtgaaataaagaattaagttaagggaccggatgatcaattaagc 220  Q
    |||||| | |||||||||||||||||||||||||||  ||||||||||||||    
T  21247283 ggaccaatttgaaataaagaattaagttaagggaccaaatgatcaattaagc 21247232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 44115468 - 44115429
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagccta 223  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  44115468 aaagaattaagttaagggaccggaggatcaattaagccta 44115429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 50003302 - 50003345
Alignment:
Q  179 gaaataaagaattaagttaagggaccggatgatcaattaagcct 222  Q
    ||||||||||||||||||||||||||  ||||||||||||||||    
T  50003302 gaaataaagaattaagttaagggaccaaatgatcaattaagcct 50003345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 786344 - 786413
Alignment:
Q  19 gaaaaacattagatatgggtggtttaccataatatactatggatctgcaatctaacggttataatcatat 88  Q
    |||||| ||||||| ||| ||||| |   |||||||||||||| |||||||| |||||||||||||||||    
T  786344 gaaaaaaattagatgtggatggttcagtgtaatatactatggacctgcaatcgaacggttataatcatat 786413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 44116767 - 44116804
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagcc 221  Q
    |||||||||||||||||||||||| |||||||||||||    
T  44116767 aaagaattaagttaagggaccggaggatcaattaagcc 44116804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 2764173 - 2764213
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagcctag 224  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  2764173 aaagaattaagttaagggatcggaggatcaattaagcctag 2764213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 9776894 - 9776850
Alignment:
Q  178 tgaaataaagaattaagttaagggaccggatgatcaattaagcct 222  Q
    |||||||||||||||||||||||||| || |||| ||||||||||    
T  9776894 tgaaataaagaattaagttaagggactgggtgatgaattaagcct 9776850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 34901830 - 34901794
Alignment:
Q  52 atactatggatctgcaatctaacggttataatcatat 88  Q
    ||||||||||||||||||| |||||||||||||||||    
T  34901830 atactatggatctgcaatcgaacggttataatcatat 34901794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 5409369 - 5409330
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagccta 223  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  5409369 aaagaattaagttaagggactgaatgatcaattaagccta 5409330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 27226623 - 27226662
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagccta 223  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  27226623 aaagaattaagttaagggaccaaatgatcaattaagccta 27226662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 19622918 - 19622972
Alignment:
Q  98 taacggcgaagaccaaaataggtaacggcagaatacatgagggaccagtttgaga 152  Q
    |||| |||| ||||||||||| ||||| ||||| |||| ||||||||||||||||    
T  19622918 taactgcgatgaccaaaatagataacgacagaagacataagggaccagtttgaga 19622972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 21248336 - 21248378
Alignment:
Q  179 gaaataaagaattaagttaagggaccggatgatcaattaagcc 221  Q
    ||||||||||||||| ||||||||||  |||||||||||||||    
T  21248336 gaaataaagaattaaattaagggaccaaatgatcaattaagcc 21248378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 17116239 - 17116195
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagcctagaaaa 228  Q
    |||||| |||||||||||| |||  ||||||||||||||||||||    
T  17116239 aaagaaataagttaagggatcggcagatcaattaagcctagaaaa 17116195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 109 - 223
Target Start/End: Original strand, 36422731 - 36422845
Alignment:
Q  109 accaaaataggtaacggcagaatacatgagggaccagtttgagatgnnnnnnnagttaaaggaccattgtgaaataaagaattaagttaagggaccggat 208  Q
    |||||||||| ||||| || ||||||| |||||||| ||||| | |       |||||| ||||||||||||||||||||||||||||||||||||||||    
T  36422731 accaaaatagataacgacataatacataagggaccaatttgaaacgtttttttagttaagggaccattgtgaaataaagaattaagttaagggaccggat 36422830  T
Q  209 gatcaattaagccta 223  Q
    |||||||||||||||    
T  36422831 gatcaattaagccta 36422845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 4701404 - 4701459
Alignment:
Q  31 atatgggtggtttaccataatatactatggatctgcaatctaacggttataatcat 86  Q
    |||||||||||| |||||||||||||||||| |||||||| |||||||||||||||    
T  4701404 atatgggtggttcaccataatatactatggacctgcaatcaaacggttataatcat 4701459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 7982522 - 7982454
Alignment:
Q  20 aaaaacattagatatgggtggtttaccataatatactatggatctgcaatctaacggttataatcatat 88  Q
    ||||| |||||||||| |||||| ||  |||||||||||||| || |||||||||||||||||||||||    
T  7982522 aaaaaaattagatatgtgtggttcactgtaatatactatggaccttcaatctaacggttataatcatat 7982454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 45047420 - 45047361
Alignment:
Q  162 agttaaaggaccattgtgaaataaagaattaagttaagggaccggatgatcaattaagcc 221  Q
    |||||| ||||||| |||||||||| ||||||||||| ||||||||| ||||||||||||    
T  45047420 agttaatggaccatcgtgaaataaataattaagttaatggaccggatcatcaattaagcc 45047361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 18343959 - 18344013
Alignment:
Q  169 ggaccattgtgaaataaagaattaagttaagggaccggatgatcaattaagccta 223  Q
    |||||||| ||||| |||||||||||||||||||||||| ||| |||||||||||    
T  18343959 ggaccattttgaaaaaaagaattaagttaagggaccggaggattaattaagccta 18344013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 41295283 - 41295247
Alignment:
Q  52 atactatggatctgcaatctaacggttataatcatat 88  Q
    ||||||||||||||||||| |||||||||||||||||    
T  41295283 atactatggatctgcaatcgaacggttataatcatat 41295247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 8537130 - 8537075
Alignment:
Q  97 ctaacggcgaagaccaaaataggtaacggcagaatacatgagggaccagtttgaga 152  Q
    ||||||| || ||||||||||| ||||| |||||||||| |||||||| |||||||    
T  8537130 ctaacggagatgaccaaaatagataacgacagaatacataagggaccaatttgaga 8537075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 1409703 - 1409650
Alignment:
Q  168 aggaccattgtgaaataaagaattaagttaagggaccggatgatcaattaagcc 221  Q
    ||||||| | ||||||||| |||||||||||||||||   ||||||||||||||    
T  1409703 aggaccactttgaaataaataattaagttaagggaccacttgatcaattaagcc 1409650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 7780723 - 7780764
Alignment:
Q  178 tgaaataaagaattaagttaagggaccggatgatcaattaag 219  Q
    ||||||||||||||||||||||||||  |||||| |||||||    
T  7780723 tgaaataaagaattaagttaagggactagatgatgaattaag 7780764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 44113536 - 44113422
Alignment:
Q  108 gaccaaaataggtaacggcagaatacatgagggaccagtttgagatgnnnnnnnagttaaaggaccattgtgaaataaagaattaagttaagggaccgga 207  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| |       |||||| ||| |||| ||||| |||||||||||||||||||||  |    
T  44113536 gaccaaaataggtaacggcagaatacataagggaccaatttgagacg-ttttttagttaagggatcattatgaaaaaaagaattaagttaagggaccata 44113438  T
Q  208 tgatcaattaagccta 223  Q
    |||| |||||||||||    
T  44113437 tgattaattaagccta 44113422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 4168753 - 4168823
Alignment:
Q  18 ggaaaaacattagatatgggtggtttaccataatatactatggatctgcaatctaacggttataatcatat 88  Q
    ||||||| |||||||||| |||||| ||  |||||||||||||| || |||||||||||||||||||||||    
T  4168753 ggaaaaaaattagatatgtgtggttcactgtaatatactatggaccttcaatctaacggttataatcatat 4168823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 8661730 - 8661670
Alignment:
Q  169 ggaccattgtgaaataaagaattaagttaagggaccggatgatcaattaagcctagaaaat 229  Q
    |||||||| || || ||||||||||||||||||||||| |||||||||||||||| |||||    
T  8661730 ggaccattctggaacaaagaattaagttaagggaccggctgatcaattaagcctaaaaaat 8661670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 38407355 - 38407423
Alignment:
Q  20 aaaaacattagatatgggtggtttaccataatatactatggatctgcaatctaacggttataatcatat 88  Q
    ||||| ||||||||| ||||||| ||  |||||||||||||| |||||||| |||||||||||||||||    
T  38407355 aaaaaaattagatatcggtggttcactgtaatatactatggacctgcaatcaaacggttataatcatat 38407423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 49162344 - 49162230
Alignment:
Q  108 gaccaaaataggtaacggcagaatacatgagggaccagtttgagatgnnnnnnnagttaaaggaccattgtgaaataaagaattaagttaagggaccgga 207  Q
    |||||||||||| ||||||||||||||| |||||||| ||| | | |       ||||||  ||||||| ||| | |||||||||||||||||||  |||    
T  49162344 gaccaaaataggaaacggcagaatacataagggaccaattttaaacgtttttt-agttaagagaccattatgagaaaaagaattaagttaagggattgga 49162246  T
Q  208 tgatcaattaagccta 223  Q
    ||||||||||||||||    
T  49162245 tgatcaattaagccta 49162230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 16955730 - 16955687
Alignment:
Q  178 tgaaataaagaattaagttaagggaccggatgatcaattaagcc 221  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||    
T  16955730 tgaaaaaaagaattaagttaagggaccagatgatcaattaagcc 16955687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 25734800 - 25734766
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaa 218  Q
    |||||||||||||||||||||||||||||||||||    
T  25734800 aaagaattaagttaagggaccggatgatcaattaa 25734766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 24653752 - 24653789
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagcc 221  Q
    |||||||||||||||||||||||| |||||||||||||    
T  24653752 aaagaattaagttaagggaccggaggatcaattaagcc 24653789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 40322314 - 40322359
Alignment:
Q  178 tgaaataaagaattaagttaagggaccggatgatcaattaagccta 223  Q
    ||||||||||||||||||||| |||||  |||||||||||||||||    
T  40322314 tgaaataaagaattaagttaatggaccaaatgatcaattaagccta 40322359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 4858250 - 4858318
Alignment:
Q  20 aaaaacattagatatgggtggtttaccataatatactatggatctgcaatctaacggttataatcatat 88  Q
    ||||| || |||||||||||||| || |||| ||||||||||||   |||| |||||||||||||||||    
T  4858250 aaaaaaatcagatatgggtggttcactataaaatactatggatcaataatcaaacggttataatcatat 4858318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 14108046 - 14107974
Alignment:
Q  16 aaggaaaaacattagatatgggtggtttaccataatatactatggatctgcaatctaacggttataatcatat 88  Q
    |||||||||  |||||||||||||||| ||  || |||| |||||| |||||||| |||||||||||| ||||    
T  14108046 aaggaaaaaacttagatatgggtggttcactgtagtatattatggacctgcaatcaaacggttataattatat 14107974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 14418003 - 14417931
Alignment:
Q  16 aaggaaaaacattagatatgggtggtttaccataatatactatggatctgcaatctaacggttataatcatat 88  Q
    |||||||||  |||||||||||||||| ||  || |||| |||||| |||||||| |||||||||||| ||||    
T  14418003 aaggaaaaaacttagatatgggtggttcactgtagtatattatggacctgcaatcaaacggttataattatat 14417931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 40926425 - 40926493
Alignment:
Q  20 aaaaacattagatatgggtggtttaccataatatactatggatctgcaatctaacggttataatcatat 88  Q
    ||||| || |||||||| ||||| |||||| ||||||||||| ||  |||| |||||||||||||||||    
T  40926425 aaaaaaatcagatatggatggttcaccatagtatactatggaccttaaatcaaacggttataatcatat 40926493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 36584984 - 36585027
Alignment:
Q  179 gaaataaagaattaagttaagggaccggatgatcaattaagcct 222  Q
    |||| |||||||||||||||||||||  ||||||||||||||||    
T  36584984 gaaaaaaagaattaagttaagggaccaaatgatcaattaagcct 36585027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 42521338 - 42521381
Alignment:
Q  179 gaaataaagaattaagttaagggaccggatgatcaattaagcct 222  Q
    |||| ||||||||||||||| |||||| ||||||||||||||||    
T  42521338 gaaaaaaagaattaagttaaaggaccgaatgatcaattaagcct 42521381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 25742894 - 25742860
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaa 218  Q
    |||||||||||||||| ||||||||||||||||||    
T  25742894 aaagaattaagttaagagaccggatgatcaattaa 25742860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 35045973 - 35046015
Alignment:
Q  179 gaaataaagaattaagttaagggaccggatgatcaattaagcc 221  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  35045973 gaaataaagaattaagttaatggaccaaatgatcaattaagcc 35046015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 43703083 - 43703045
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagcct 222  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  43703083 aaagaattaagttaagggaccaaatgatcaattaagcct 43703045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 19217664 - 19217619
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagcctagaaaat 229  Q
    |||||| ||||||||||||||||  ||||||||||||||| |||||    
T  19217664 aaagaaataagttaagggaccggcagatcaattaagcctaaaaaat 19217619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 19219043 - 19219104
Alignment:
Q  162 agttaaaggaccattgtgaaataaagaattaagttaagggaccggatgatcaattaagccta 223  Q
    ||||| ||||||| | ||||  ||||||||||||| ||||||||| || |||||||||||||    
T  19219043 agttataggaccaatttgaagaaaagaattaagttcagggaccgggtgttcaattaagccta 19219104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 38408283 - 38408327
Alignment:
Q  108 gaccaaaataggtaacggcagaatacatgagggaccagtttgaga 152  Q
    ||||||||||| ||||||||||| |||| |||||||| |||||||    
T  38408283 gaccaaaatagataacggcagaagacataagggaccaatttgaga 38408327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 43704531 - 43704575
Alignment:
Q  179 gaaataaagaattaagttaagggaccggatgatcaattaagccta 223  Q
    |||| ||| |||||||||||||||||  |||||||||||||||||    
T  43704531 gaaaaaaataattaagttaagggaccaaatgatcaattaagccta 43704575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 9415731 - 9415618
Alignment:
Q  108 gaccaaaataggtaacggcagaatacatgagggaccagtttgagatgnnnnnnnagttaaaggaccattgtgaaataaagaattaagttaagggaccgga 207  Q
    |||||||||||||||||||| ||||||| |||||||| ||| ||| |       |||||| |||||||| ||||| ||||||||||||||||||||  ||    
T  9415731 gaccaaaataggtaacggcataatacataagggaccaatttaagacgtttttt-agttaagggaccattatgaaaaaaagaattaagttaagggactaga 9415633  T
Q  208 tgatcaattaagcct 222  Q
    |||||||||||||||    
T  9415632 tgatcaattaagcct 9415618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 22169216 - 22169271
Alignment:
Q  97 ctaacggcgaagaccaaaataggtaacggcagaatacatgagggaccagtttgaga 152  Q
    ||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  22169216 ctaactgcgaagaccaaaatagataacggcagaatacataagggaccagtttgaga 22169271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 7814880 - 7814929
Alignment:
Q  170 gaccattgtgaaataaagaattaagttaagggaccggatgatcaattaag 219  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  7814880 gaccattgtgaaaaaaagaattaagttaagggaccggaggatcaattaag 7814929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 44978561 - 44978640
Alignment:
Q  9 agaagcaaaggaaaaacattagatatgggtggtttaccataatatactatggatctgcaatctaacggttataatcatat 88  Q
    ||||| |||||||||  |||||||||| |||||| ||  |||||||||| | | |||||||| |||||||||||||||||    
T  44978561 agaagaaaaggaaaataattagatatgagtggttcactgtaatatactacgaacctgcaatcaaacggttataatcatat 44978640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 52741701 - 52741630
Alignment:
Q  18 ggaaaaacattagatatgggtggtttaccataatatactatggatct-gcaatctaacggttataatcatat 88  Q
    ||||||| || |||||||||||||| || ||||||||||||||| ||  ||||| |||||||||||||||||    
T  52741701 ggaaaaaaatcagatatgggtggttcactataatatactatggacctaacaatcaaacggttataatcatat 52741630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 46127841 - 46127783
Alignment:
Q  164 ttaaaggaccattgtgaaataaagaattaagttaagggaccggatgatcaattaagcct 222  Q
    |||| |||||||||| ||||||| ||||||||||||||| |  ||||||||||||||||    
T  46127841 ttaagggaccattgttaaataaaaaattaagttaagggatcaaatgatcaattaagcct 46127783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 51089895 - 51089933
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagcct 222  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  51089895 aaagaattaagttaagggaccggaggatcaattaagcct 51089933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 27690562 - 27690603
Alignment:
Q  47 ataatatactatggatctgcaatctaacggttataatcatat 88  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  27690562 ataacatactatggatctgcaatcgaacggttataatcatat 27690603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 51694561 - 51694622
Alignment:
Q  162 agttaaaggaccattgtgaaataaagaattaagttaagggaccggatgatcaattaagccta 223  Q
    ||||| ||||||| | ||||  ||||||||||||||||||||||| || |||||||||||||    
T  51694561 agttataggaccaatttgaagaaaagaattaagttaagggaccgggtgttcaattaagccta 51694622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 18656755 - 18656798
Alignment:
Q  178 tgaaataaagaattaagttaagggaccggatgatcaattaagcc 221  Q
    ||||||||||||||||||||| |||||  |||||||||||||||    
T  18656755 tgaaataaagaattaagttaatggaccaaatgatcaattaagcc 18656798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 51088566 - 51088528
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagcct 222  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  51088566 aaagaattaagttaagggaccggaggttcaattaagcct 51088528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 30550440 - 30550399
Alignment:
Q  47 ataatatactatggatctgcaatctaacggttataatcatat 88  Q
    |||| ||||||||||||||||||  |||||||||||||||||    
T  30550440 ataacatactatggatctgcaattgaacggttataatcatat 30550399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 9416987 - 9417071
Alignment:
Q  4 agaggagaagcaaaggaaaaacattagatatgggtggtttaccataatatactatggatctgcaatctaacggttataatcatat 88  Q
    |||| ||||| |||| ||||  ||||||||||||||||| || |||| ||  |||||| ||  |||| |||||||||||||||||    
T  9416987 agagaagaagaaaagaaaaataattagatatgggtggttcactataacatgatatggaccttaaatcaaacggttataatcatat 9417071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 37623428 - 37623392
Alignment:
Q  52 atactatggatctgcaatctaacggttataatcatat 88  Q
    ||||||||||||||||||| || ||||||||||||||    
T  37623428 atactatggatctgcaatcgaatggttataatcatat 37623392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 52086664 - 52086620
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagcctagaaaa 228  Q
    |||||| ||||||||||||||||  ||||||||||||||| ||||    
T  52086664 aaagaaataagttaagggaccggcagatcaattaagcctaaaaaa 52086620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 11113946 - 11113884
Alignment:
Q  26 attagatatgggtggtttaccataatatactatggatctgcaatctaacggttataatcatat 88  Q
    ||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||| ||||    
T  11113946 attagatatgggtggttcaccataatatactatggacctgcaatcgaacggttataattatat 11113884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 4373415 - 4373375
Alignment:
Q  178 tgaaataaagaattaagttaagggaccggatgatcaattaa 218  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  4373415 tgaaataaagaattaagttaagggaccgaatgatcaattaa 4373375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 39591155 - 39591083
Alignment:
Q  16 aaggaaaaacattagatatgggtggtttaccataatatactatggatctgcaatctaacggttataatcatat 88  Q
    ||||||||| || | |||||| ||||| ||  |||||||||||||| |||||||| |||||||||||||||||    
T  39591155 aaggaaaaaaatcaaatatggatggttcactgtaatatactatggacctgcaatcaaacggttataatcatat 39591083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 53150456 - 53150398
Alignment:
Q  162 agttaaaggaccattgtgaaataaagaattaagttaagggaccggatgatcaattaagc 220  Q
    ||||||| ||||||||||| | ||| ||||||||||| ||||| |||||||||||||||    
T  53150456 agttaaaagaccattgtgagaaaaataattaagttaaaggaccagatgatcaattaagc 53150398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 5574237 - 5574200
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagcc 221  Q
    |||||||||||||||||||||||| |||||||||||||    
T  5574237 aaagaattaagttaagggaccggaggatcaattaagcc 5574200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 14210190 - 14210138
Alignment:
Q  169 ggaccattgtgaaataaagaattaagttaagggaccggatgatcaattaagcc 221  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  14210190 ggaccattgtgaaaaaaagaattaagttaagggaccagatgatcaattaagcc 14210138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 2166223 - 2166174
Alignment:
Q  103 gcgaagaccaaaataggtaacggcagaatacatgagggaccagtttgaga 152  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||||||||    
T  2166223 gcgaagacgaaaatagataacggcagaatacataagggaccagtttgaga 2166174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 25213117 - 25213156
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagccta 223  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  25213117 aaagaattaagttaagggaccggaggatcaattaagccta 25213156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 25277269 - 25277308
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagccta 223  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  25277269 aaagaattaagttaagggaccggaggatcaattaagccta 25277308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 223
Target Start/End: Original strand, 41906407 - 41906522
Alignment:
Q  108 gaccaaaataggtaacggcagaatacatgagggaccagtttgagatgnnnnnnnagttaaaggaccattgt-gaaataaagaattaagttaagggaccgg 206  Q
    ||||||||||||||||||||||||| || |||| ||| ||||||| |       |||||| |||||||| |  ||| |||||||||||||||||||||      
T  41906407 gaccaaaataggtaacggcagaatatataaggggccaatttgagacg-ttttttagttaagggaccattataaaaaaaaagaattaagttaagggaccat 41906505  T
Q  207 atgatcaattaagccta 223  Q
    ||||| |||||||||||    
T  41906506 atgattaattaagccta 41906522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 7427895 - 7427935
Alignment:
Q  48 taatatactatggatctgcaatctaacggttataatcatat 88  Q
    |||||||||||||| || |||||||||||||||||||||||    
T  7427895 taatatactatggaccttcaatctaacggttataatcatat 7427935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 1010866 - 1010828
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagcct 222  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  1010866 aaagaattaaattaagggaccggatgttcaattaagcct 1010828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 14212282 - 14212336
Alignment:
Q  169 ggaccattgtgaaataaagaattaagttaagggaccggatgatcaattaagccta 223  Q
    |||||||| ||||| |||||||||||||||  ||||  |||||||||||||||||    
T  14212282 ggaccattatgaaaaaaagaattaagttaaatgaccaaatgatcaattaagccta 14212336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 15509312 - 15509266
Alignment:
Q  98 taacggcgaagaccaaaataggtaacggcagaatacatgagggacca 144  Q
    |||||| || ||||||||||||||||||||||| |||| ||||||||    
T  15509312 taacggagaggaccaaaataggtaacggcagaagacataagggacca 15509266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 41521529 - 41521459
Alignment:
Q  18 ggaaaaacattagatatgggtggtttaccataatatactatggatctgcaatctaacggttataatcatat 88  Q
    ||||||| |||||||||| |||||| ||  |||||||||||||| || |||||||||||||||||||||||    
T  41521529 ggaaaaaaattagatatgtgtggttcactgtaatatactatggaccttcaatctaacggttataatcatat 41521459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 31872717 - 31872778
Alignment:
Q  27 ttagatatgggtggtttaccataatatactatggatctgcaatctaacggttataatcatat 88  Q
    ||||||| || ||||| ||| || |||||||||||||||||||| |||||||||||||||||    
T  31872717 ttagatacggatggttcaccgtagtatactatggatctgcaatcaaacggttataatcatat 31872778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 41767243 - 41767287
Alignment:
Q  179 gaaataaagaattaagttaagggaccggatgatcaattaagccta 223  Q
    ||||||||||||||||||||||||||  |||||||||||||||||    
T  41767243 gaaataaagaattaagttaagggaccaaatgatcaattaagccta 41767287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 10053639 - 10053718
Alignment:
Q  9 agaagcaaaggaaaaacattagatatgggtggtttaccataatatactatggatctgcaatctaacggttataatcatat 88  Q
    ||||| |||||||||  |||||||||| |||||| ||  |||||||||| | | |||||||| |||||||||||||||||    
T  10053639 agaagaaaaggaaaataattagatatgagtggttcactgtaatatactacgaacctgcaatcaaacggttataatcatat 10053718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 20308960 - 20308912
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagcctagaaaatttg 232  Q
    |||||| ||||||||||||||||  ||||||||||||||| ||||||||    
T  20308960 aaagaaataagttaagggaccggcagatcaattaagcctataaaatttg 20308912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 21095593 - 21095545
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagcctagaaaatttg 232  Q
    |||||| ||||||||||||||||  ||||||||||||||| ||||||||    
T  21095593 aaagaaataagttaagggaccggcagatcaattaagcctataaaatttg 21095545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 2419985 - 2419938
Alignment:
Q  105 gaagaccaaaataggtaacggcagaatacatgagggaccagtttgaga 152  Q
    |||||||||||||| ||||||||||||| || |||||||| |||||||    
T  2419985 gaagaccaaaatagataacggcagaatatataagggaccaatttgaga 2419938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 21670182 - 21670127
Alignment:
Q  97 ctaacggcgaagaccaaaataggtaacggcagaatacatgagggaccagtttgaga 152  Q
    ||||||| ||||||||||| ||||||||| |||| |||| |||||||| |||||||    
T  21670182 ctaacggagaagaccaaaagaggtaacggaagaagacataagggaccaatttgaga 21670127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 31872802 - 31872857
Alignment:
Q  97 ctaacggcgaagaccaaaataggtaacggcagaatacatgagggaccagtttgaga 152  Q
    ||||| |||||||||||||||| |||||| ||||||||| | |||||| |||||||    
T  31872802 ctaactgcgaagaccaaaatagataacggtagaatacataacggaccaatttgaga 31872857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 41766158 - 41766116
Alignment:
Q  180 aaataaagaattaagttaagggaccggatgatcaattaagcct 222  Q
    ||||||||||||||||||||||| |  ||||||||||||||||    
T  41766158 aaataaagaattaagttaagggatcaaatgatcaattaagcct 41766116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 2420078 - 2420017
Alignment:
Q  27 ttagatatgggtggtttaccataatatactatggatctgcaatctaacggttataatcatat 88  Q
    ||||||| || ||||| ||| || ||||||||||| |||||||| |||| ||||||||||||    
T  2420078 ttagatacggatggttcaccgtagtatactatggacctgcaatcaaacgattataatcatat 2420017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 38665947 - 38665984
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagcc 221  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  38665947 aaagaattaagttaaaggaccgggtgatcaattaagcc 38665984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 40250090 - 40250045
Alignment:
Q  173 cattgtgaaataaagaattaagttaagggaccggatgatcaattaa 218  Q
    |||||||||| |||||||||||||||  ||||| ||||||||||||    
T  40250090 cattgtgaaaaaaagaattaagttaaaagaccgaatgatcaattaa 40250045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 43416030 - 43416091
Alignment:
Q  162 agttaaaggaccattgtgaaataaagaattaagttaagggaccggatgatcaattaagccta 223  Q
    |||||| |||||| |  |||| |||||||||||||||||||||   ||||||||||||||||    
T  43416030 agttaagggaccaattcgaaaaaaagaattaagttaagggaccaattgatcaattaagccta 43416091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 44607383 - 44607424
Alignment:
Q  162 agttaaaggaccattgtgaaataaagaattaagttaagggac 203  Q
    |||||||||||| || |||||||||||||||| |||||||||    
T  44607383 agttaaaggacctttatgaaataaagaattaaattaagggac 44607424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 13360460 - 13360416
Alignment:
Q  108 gaccaaaataggtaacggcagaatacatgagggaccagtttgaga 152  Q
    ||||||||||| |||||| ||||||||| |||||||| |||||||    
T  13360460 gaccaaaatagataacggtagaatacataagggaccaatttgaga 13360416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 43414418 - 43414374
Alignment:
Q  179 gaaataaagaattaagttaagggaccggatgatcaattaagccta 223  Q
    |||| ||||||| |||||||||||||  |||||||||||||||||    
T  43414418 gaaaaaaagaataaagttaagggaccaaatgatcaattaagccta 43414374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 54803 - 54733
Alignment:
Q  18 ggaaaaacattagatatgggtggtttaccataatatactatggatctgcaatctaacggttataatcatat 88  Q
    ||||||| || |||||||| ||||| ||  |||||||||||| |||||||||| |||||||||||||||||    
T  54803 ggaaaaaaatcagatatggatggttcactgtaatatactatgaatctgcaatcaaacggttataatcatat 54733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 13507241 - 13507290
Alignment:
Q  169 ggaccattgtgaaataaagaattaagttaagggaccggatgatcaattaa 218  Q
    |||| ||||||||||||||||||||||||| |||||||||||||| ||||    
T  13507241 ggacaattgtgaaataaagaattaagttaatggaccggatgatcagttaa 13507290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 18230354 - 18230317
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagcc 221  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18230354 aaagaattaagttaagggaccggatgatcaattaagcc 18230317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 13504528 - 13504584
Alignment:
Q  162 agttaaaggaccattgtgaaataaagaattaagttaagggaccggatgatcaattaa 218  Q
    |||||| |||| ||||||||||||||||||||||||| ||| | |||||||||||||    
T  13504528 agttaagggacaattgtgaaataaagaattaagttaatggatcagatgatcaattaa 13504584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 33807899 - 33807831
Alignment:
Q  20 aaaaacattagatatgggtggtttaccataatatactatggatctgcaatctaacggttataatcatat 88  Q
    ||||| || |||||||||||||| |||||| ||||||||||| ||  |||| |||||||||||||||||    
T  33807899 aaaaaaatcagatatgggtggttcaccatagtatactatggaccttaaatcaaacggttataatcatat 33807831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 9102717 - 9102776
Alignment:
Q  162 agttaaaggaccattgtgaaataaagaattaagttaagggaccggatgatcaattaagcc 221  Q
    ||||||||||||| | |||||||||||| ||||||||||||||  ||||| |||||||||    
T  9102717 agttaaaggaccactttgaaataaagaaataagttaagggaccaaatgattaattaagcc 9102776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 28931176 - 28931235
Alignment:
Q  162 agttaaaggaccattgtgaaataaagaattaagttaagggaccggatgatcaattaagcc 221  Q
    ||||| ||||||||  ||||| ||||||||||||||||||| | ||||||||||||||||    
T  28931176 agttataggaccatattgaaaaaaagaattaagttaagggatcagatgatcaattaagcc 28931235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 24318143 - 24318186
Alignment:
Q  179 gaaataaagaattaagttaagggaccggatgatcaattaagcct 222  Q
    |||| |||||||||||||||||||||  ||||||||||||||||    
T  24318143 gaaaaaaagaattaagttaagggaccaaatgatcaattaagcct 24318186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 13281485 - 13281513
Alignment:
Q  188 aattaagttaagggaccggatgatcaatt 216  Q
    |||||||||||||||||||||||||||||    
T  13281485 aattaagttaagggaccggatgatcaatt 13281513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 43067 - 43126
Alignment:
Q  162 agttaaaggaccattgtgaaataaagaattaagttaagggaccggatgatcaattaagcc 221  Q
    ||||| ||||||| | ||||  ||||||||||||||||||||| |||| |||||||||||    
T  43067 agttataggaccaatttgaagaaaagaattaagttaagggaccagatgttcaattaagcc 43126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 22550 - 22587
Alignment:
Q  184 aaagaattaagttaagggaccggatgatcaattaagcc 221  Q
    ||||||||||||||||||||||| || |||||||||||    
T  22550 aaagaattaagttaagggaccgggtgttcaattaagcc 22587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 72920 - 72960
Alignment:
Q  48 taatatactatggatctgcaatctaacggttataatcatat 88  Q
    ||||||||||| || |||||||| |||||||||||||||||    
T  72920 taatatactatagacctgcaatcaaacggttataatcatat 72960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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