View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20278_high_11 (Length: 356)
Name: NF20278_high_11
Description: NF20278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20278_high_11 |
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| [»] scaffold0642 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 2303664 - 2303462
Alignment:
| Q |
10 |
ataattctcataaaatatgacagaccataaaggaaataagatgaaataataggaaactgataaaatacaacaaatcattagatagccgaaatgattccat |
109 |
Q |
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| T |
2303664 |
ataattctgataaaatatgacagaccataaaggaaataagatgaaataataggaaactgataaaat-caacaaatcattacatagccgaaatgattccat |
2303566 |
T |
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| Q |
110 |
ttaagacaggaaattataagtgatattgtcaaatcatgctccataatcactttgaatcttcaatcttgatacatggcattttaggactcttagtagtgga |
209 |
Q |
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| ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2303565 |
tgaagacagaaaataataagtgatattgccaaatcatgctccataatcactttgaatcttcaatcttgataaatggcattttaggactcttagtagtgga |
2303466 |
T |
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| Q |
210 |
tgca |
213 |
Q |
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|||| |
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| T |
2303465 |
tgca |
2303462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 2303432 - 2303386
Alignment:
| Q |
206 |
tggatgcaaactttcggcagatctttttctcactaatttacttcttg |
252 |
Q |
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| T |
2303432 |
tggatgcaaactttcggcagatctttttctcactaatttacttcttg |
2303386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 30112061 - 30112116
Alignment:
| Q |
158 |
actttgaatcttcaatcttgatacatggcattttaggactcttagtagtggatgca |
213 |
Q |
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| T |
30112061 |
actttgaatcttcaatcttgatgcatgacattttagaactctttggagtggatgca |
30112116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 7047 - 6973
Alignment:
| Q |
139 |
caaatcatgctccataatcactttgaatcttcaatcttgatacatggcattttaggactcttagtagtggatgca |
213 |
Q |
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| T |
7047 |
caaataatgctccttgattactttgaatcttcaatcacgatccatggcattttaggactctttgcggtggatgca |
6973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 16960 - 16886
Alignment:
| Q |
139 |
caaatcatgctccataatcactttgaatcttcaatcttgatacatggcattttaggactcttagtagtggatgca |
213 |
Q |
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| T |
16960 |
caaataatgctccttgattactttgaatcttcaatcacgatccatggcattttaggactctttgcggtggatgca |
16886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 22022 - 22096
Alignment:
| Q |
139 |
caaatcatgctccataatcactttgaatcttcaatcttgatacatggcattttaggactcttagtagtggatgca |
213 |
Q |
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| T |
22022 |
caaataatgctccttgattactttgaatcttcaatcacgatccatggcattttaggactctttgcggtggatgca |
22096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 50904 - 50978
Alignment:
| Q |
139 |
caaatcatgctccataatcactttgaatcttcaatcttgatacatggcattttaggactcttagtagtggatgca |
213 |
Q |
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| T |
50904 |
caaataatgctccttgattactttgaatcttcaatcatgatccatggcattttaggaatctttgcggtggatgca |
50978 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 44498664 - 44498590
Alignment:
| Q |
139 |
caaatcatgctccataatcactttgaatcttcaatcttgatacatggcattttaggactcttagtagtggatgca |
213 |
Q |
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||||| ||||||| | || ||||||||||||||||| |||| ||||||||||||||| |||| | ||||||||| |
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| T |
44498664 |
caaataatgctccttgattactttgaatcttcaatcatgatccatggcattttaggaatctttgcggtggatgca |
44498590 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 3381257 - 3381204
Alignment:
| Q |
145 |
atgctccataatcactttgaatcttcaatcttgatacatggcattttaggactc |
198 |
Q |
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||||||| | || ||||||||||||||||| ||| |||||||||||||||||| |
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| T |
3381257 |
atgctccttgattactttgaatcttcaatcacgatccatggcattttaggactc |
3381204 |
T |
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