View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20278_high_13 (Length: 342)
Name: NF20278_high_13
Description: NF20278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20278_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 75 - 290
Target Start/End: Original strand, 22562826 - 22563038
Alignment:
| Q |
75 |
ccgaaaacttcagccattatgccgaataaatgttctcaaaaacctgcaaaattacgcagcnnnnnnncgcaaactaagacagcaaaatgcacgcaacatc |
174 |
Q |
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| T |
22562826 |
ccgaaaacttcagccattatgccgaagaaatgttctcaaaaacctacaaaattatgcagcaaaat---gcaaacggagacagcaaaacgcatgcaacgtc |
22562922 |
T |
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| Q |
175 |
agcacccctctgcgactacacaaaaacctcattgttaagtaatgggactttgttaatgcgacttcgttaattttcttctgctaaactgattttcaaggtg |
274 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22562923 |
agcacccctccgcgactgcacaaaaacctcattgttaagtaatgggactttgttaatgcgacttcgttaattttcttctgctaaactgattttcaaggtg |
22563022 |
T |
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| Q |
275 |
cgtcattcaacaaatt |
290 |
Q |
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||||||| ||| |||| |
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| T |
22563023 |
cgtcatttaactaatt |
22563038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 22563120 - 22563167
Alignment:
| Q |
278 |
cattcaacaaattcttttgagctattatttggtttactacattagttg |
325 |
Q |
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| T |
22563120 |
cattccacaaattcttttgagctattatttggtttactacattagttg |
22563167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 22562716 - 22562764
Alignment:
| Q |
19 |
atagccgtgagggacaacaacaattaaaaaatcattcaagcagccgaga |
67 |
Q |
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| T |
22562716 |
atagccgccagggacaacaccaattaaaaaatcattcaagcagccgaga |
22562764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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