View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20278_high_14 (Length: 287)
Name: NF20278_high_14
Description: NF20278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20278_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 40632509 - 40632777
Alignment:
| Q |
1 |
caagcatttgttattgcaaggattagattttagataaaaatcataagcaaaggtgaaaaacacttgcgttttcatcttaatggaaatatgattagcgtgc |
100 |
Q |
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| T |
40632509 |
caagcatttgttattgcaaggattagattttagataaaaatcataagcaaaggtgaaaaacacttgcgttttcatcttaatggaaatatgattagcgtgc |
40632608 |
T |
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| Q |
101 |
aagagaaaagttgaatcttttaatttttatgcaatatatccaacctgtaaatatagttcaacaaaatgtttgacagaattgggagcctctttttactcnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40632609 |
aagagaaaagttgaatcttttaatttttatgcaatatatccaacgtgtaaatatagttcaacaaaatgtttgacagaattgggagcctctttttactcaa |
40632708 |
T |
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| Q |
201 |
nnnnnngaagaaaaagaattggaagcctcgttgttggattgtcttatgcgttgaaaaccagtttgcattag |
271 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40632709 |
aaaaa--aaaaaaaagaattggaagcctcgttgttggattgtcttatgcgttgaaaaccagtttgcattag |
40632777 |
T |
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