View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20278_high_15 (Length: 275)
Name: NF20278_high_15
Description: NF20278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20278_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 22562284 - 22562436
Alignment:
| Q |
13 |
aatatcaatagacgatgcataagacataggcttaaaagatgcacgtaaagggtacgaacctttgacacgcctagttcttgaggtgtcatagaagtattgg |
112 |
Q |
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| T |
22562284 |
aatatcaatagacgatgcataaggcataggcttaaaagatgcacataaaaggtacgagcctttgacacgcctagctctagaggtgtcatagaagtgtcgg |
22562383 |
T |
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| Q |
113 |
acatcaacgcatgtcggacacggcggcacgcctagttctagaggtgtacgtaa |
165 |
Q |
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| T |
22562384 |
acatcaacgcatgtcggacacggcggcacgcctagttctagaggtgtacgtaa |
22562436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 22562649 - 22562722
Alignment:
| Q |
196 |
aatcgcctaaatttttattggcttcaacccaccaccacaagtgtttataggtgggctgcagaacaaaatagccg |
269 |
Q |
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| T |
22562649 |
aatcgcctaaatttttattggcttcaacccaccaccgcaagtgtttataggcgggctgcagatcaaaatagccg |
22562722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 34409386 - 34409326
Alignment:
| Q |
98 |
tcatagaagtattggacatcaacgcatgtcggacacggcggcacgcctagttctagaggtg |
158 |
Q |
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| T |
34409386 |
tcataggagtgtcggacatcaacgcgtgtccgacaccgcgacacgcctagtcctagaggtg |
34409326 |
T |
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