View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20278_high_2 (Length: 601)
Name: NF20278_high_2
Description: NF20278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20278_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 12 - 368
Target Start/End: Original strand, 34314505 - 34314861
Alignment:
| Q |
12 |
aaaggtgatcgttggcatagagctgaaaggatgtatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaaggctaagg |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
34314505 |
aaaggtgatcgttggcatagagctgaaaggatgtatggaaaattctggagacagcttagattgccggagaatgctgattttgattccgtgaaggctaagg |
34314604 |
T |
|
| Q |
112 |
tggaaaatggtgttcttattttgacacttaataagctgtcccatgaatatcagattaaaagtattagagttgttagcattgataaggagaatgagaaatc |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34314605 |
tggaaaatggtgttcttattttgacacttaataagctgtcccatgaatatcagattaaaagtattagagttgttagcattgataaggagaatgagaaatc |
34314704 |
T |
|
| Q |
212 |
aggcaaacttaataatgatggggctaataacattgaactttgaaataagctttttaattctatgtttagtttgaataatgggatttcacctaggatttgg |
311 |
Q |
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|||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
34314705 |
aggcaagcttaataatgatggggctaataccactgaactttgaaataagctttttaattctatgtttggtttgaataaagggatttcacctaggatttgg |
34314804 |
T |
|
| Q |
312 |
ttgttagtgtgatgaaattaatcacttgtttgatggttagtgttgtagagggtttag |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34314805 |
ttgttagtgtgatgaaattaatcacttgtttgatggttagtgttgtagagggtttag |
34314861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 582
Target Start/End: Complemental strand, 34317248 - 34316686
Alignment:
| Q |
12 |
aaaggtgatcgttggcatagagctgaaaggatgtatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaaggctaagg |
111 |
Q |
| |
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||||||||||||||||| | || ||||||| |||| |||||||||||||||||| | ||||||||||||||||||||||| ||||| | |||||||| |
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|
| T |
34317248 |
aaaggtgatcgttggcacaaagttgaaagggtgtacggaaaattctggagacagttaagattgccagagaatgctgatttggattcaattaaggctaata |
34317149 |
T |
|
| Q |
112 |
tggaaaatggtgttcttattttgacacttaataagctgtcccatgaatatcagattaaaagtattagagttgttagcattgataaggagaatgagaaatc |
211 |
Q |
| |
|
||||||||| ||||||| ||||||| |||||||| |||| |||| | |||| ||| || | |||||||| ||| ||||| |||||||||| |
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| T |
34317148 |
aggaaaatggagttcttactttgacatttaataagttgtcgcatgg---taagatcaaaggttct-----tgttagcaaggatgaggaggatgagaaatc |
34317057 |
T |
|
| Q |
212 |
aggcaaacttaataatgatggggctaataacattgaactttgaaataagctttttaattctatgtttagtttgaataatgggatttcacctaggatttgg |
311 |
Q |
| |
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|||||| | |||||| |||||| || || || |||||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||| ||||| | |
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|
| T |
34317056 |
aggcaagatcaataataatggggatagtagcactgaactttgaaataagctttttaaatctatgtttggtttgaataaagggattttacctaagatttag |
34316957 |
T |
|
| Q |
312 |
ttgttagtgtgatgaaattaatcacttgtttgatggttagtgttgtagagggtttagaattctctatagctagttgggttttgtgt-tttgtacctttat |
410 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| ||| | |||| |||||| |
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|
| T |
34316956 |
ttgttagtgtgatgaaattaatcacttgtttgatgattagtgttgtagagggtttagaaatctctatagctagttaggttttatgtctctgtagctttat |
34316857 |
T |
|
| Q |
411 |
cttttatgtttgatacttcttgaattgaatggtannnnnnnnnnnngtcaaggaatattgtctttattccatgactctttgaattatgatattatttgtc |
510 |
Q |
| |
|
|| |||||||||| || ||||||||||||||| | ||||||||||||||||| || ||| |||||| ||||||||||||||||||| |
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| T |
34316856 |
tttgtatgtttgatgctccttgaattgaatggt---ttttttttttggtaaggaatattgtctttactctatgtctctttaaattatgatattatttgtc |
34316760 |
T |
|
| Q |
511 |
attttgtcttcattattttttatatgatcgatgatcatattagctcca--aggtgatgttccacaaatcattct |
582 |
Q |
| |
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||||||||||||||||||||||||||| | || ||||||||| ||| | |||||||||||||||||||||||| |
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|
| T |
34316759 |
attttgtcttcattattttttatatgacccataatcatattaactctaagaggtgatgttccacaaatcattct |
34316686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 12 - 258
Target Start/End: Complemental strand, 34304729 - 34304486
Alignment:
| Q |
12 |
aaaggtgatcgttggcatagagctgaaaggatgtatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaaggctaagg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||| || ||||||||||| |||||||||||||||||| |
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|
| T |
34304729 |
aaaggtgatcgttggcatagagctgaaagatcatatggaaaattttggaggcaatttagattgcctgaaaatgctgatttggattctgtgaaggctaaga |
34304630 |
T |
|
| Q |
112 |
tggaaaatggtgttcttattttgacacttaataagctgtcccatgaatatcagattaaaagtattagagttgttagcattgataaggagaatgagaaatc |
211 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
34304629 |
tagaaaatggtgttcttactttgacacttaataagttgtctcatg---atcagattaaaagtactagagttgttagcattgatgaggagaatgagaaatc |
34304533 |
T |
|
| Q |
212 |
aggcaaacttaataatgatggggctaataacattgaactttgaaata |
258 |
Q |
| |
|
| ||| | || ||||||||||||||||||| ||| |||||||||| |
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|
| T |
34304532 |
acccaaggtcaacaatgatggggctaataacaatgagctttgaaata |
34304486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 392 - 579
Target Start/End: Original strand, 34314862 - 34315053
Alignment:
| Q |
392 |
ttgtgttttgtacctttatcttttatgtttgatacttcttgaattgaatggtannnnnnnnnnnngtcaaggaatattgtctttattccatgactctttg |
491 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| | || |||||||| |
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| T |
34314862 |
ttgtgttttgtagctttatcttttatgtttgatacttcttgaattgaatggtatttttttttt--gtcaaggaatatcgtctttatcctataactctttg |
34314959 |
T |
|
| Q |
492 |
aattatgatattatttgtcattttgtcttcattattttt------tatatgatcgatgatcatattagctccaaggtgatgttccacaaatcat |
579 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34314960 |
aattatgatattatttgtcgttttgtcttcattattttttatatatatatgatcgatgatcatattagctccaaggtgatgttccacaaatcat |
34315053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 33426342 - 33426586
Alignment:
| Q |
12 |
aaaggtgatcgttggcatagagctgaaaggatgtatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaaggctaagg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| || ||||||||||| ||||| || ||||| ||| |
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|
| T |
33426342 |
aaaggtgatcgttggcatagagctgaaagatcatatggaaaattttggagacagtttagattgcctgaaaatgctgatttggattcggttaaggccaaga |
33426441 |
T |
|
| Q |
112 |
tggaaaatggtgttcttattttgacacttaataagctgtcccatgaatatcagattaaaagtattagagttgttagcattgataaggagaatgagaaatc |
211 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||| |||| |||| | |||||||||||| |||| ||||||||||||| |||||||||||||| | |
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|
| T |
33426442 |
tggaaaatggtgttcttactttaacacttcgtaagttgtcacatg---gtaagattaaaagtactagacttgttagcattgaggaggagaatgagaaagc |
33426538 |
T |
|
| Q |
212 |
aggcaaacttaataatgatggggctaataacattgaactttgaaataa |
259 |
Q |
| |
|
| |||| |||| |||||| ||||||||||| ||| ||| ||||||| |
|
|
| T |
33426539 |
aagcaagcttagcgatgatgaggctaataacaatgagcttggaaataa |
33426586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 34322903 - 34322759
Alignment:
| Q |
13 |
aaggtgatcgttggcatagagctgaaaggatgtatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaaggctaaggt |
112 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||||| ||||||||||| || |||||||||| || |||| |||||| ||||| |||||||||||| | |
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|
| T |
34322903 |
aaggtgatcattggcatagagttgaaagatcttatgggaaattctggaggcaatttagattgcctgaaaatgttgatttggattcagtgaaggctaagat |
34322804 |
T |
|
| Q |
113 |
ggaaaatggtgttcttattttgacacttaataagctgtcccatga |
157 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||| ||||| |
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|
| T |
34322803 |
ggaaaatggtgtacttactttgacacttaataagttgtcacatga |
34322759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 34312068 - 34312206
Alignment:
| Q |
13 |
aaggtgatcgttggcatagagctgaaaggatgtatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaaggctaaggt |
112 |
Q |
| |
|
||||||||| |||||| |||| |||||| ||||||||||||||||| || ||||||||||||| |||| |||||| || || || |||||||| | |
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|
| T |
34312068 |
aaggtgatcattggcacagagttgaaagatcttatggaaaattctggaggcaatttagattgccagaaaatgttgatttggactcagttaaggctaaaat |
34312167 |
T |
|
| Q |
113 |
ggaaaatggtgttcttattttgacacttaataagctgtc |
151 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
34312168 |
ggaaaatggtgtacttactttgacacttaataagttgtc |
34312206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 25651366 - 25651248
Alignment:
| Q |
11 |
caaaggtgatcgttggcatagagctgaaaggatgtatggaaaattctggagacagcttagattgccagagaatgctgattttgattctgtgaaggctaag |
110 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| ||||| |||| |||||| ||||| | ||| | ||| |
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| T |
25651366 |
caaaagtgatcgttggcatagagttgaaaggatgtgtggaaaattctggagacaacttagattaccagaaaatgttgatttggattcgattaagacaaag |
25651267 |
T |
|
| Q |
111 |
gtggaaaatggtgttctta |
129 |
Q |
| |
|
||||| |||||||||||| |
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|
| T |
25651266 |
atggaagatggtgttctta |
25651248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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