View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20278_high_4 (Length: 548)
Name: NF20278_high_4
Description: NF20278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20278_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 17 - 548
Target Start/End: Complemental strand, 49591722 - 49591191
Alignment:
| Q |
17 |
atcaggtactacatattaatattatggttctaaactgtagttgtagtcgtggttgccgttgcgatgtgaaccttaatattgcgccaaaatgctaacaaat |
116 |
Q |
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| T |
49591722 |
atcaggtactacatattaatattatggttctaaactgtagttgtagtcgtggttgcagttgcgatgtgaaccttaatattgcgccaaaatgctaacaaat |
49591623 |
T |
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| Q |
117 |
gaggtagccacttcaactagtggagttcgtaactggtcaatatgtcgatccatcaactgcgatcagttctcagttatttggttcaattgtggtctaatag |
216 |
Q |
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| T |
49591622 |
gaggtagccacttcaactagtggagttcgtaactggtcaatatgtcgatccatcaactgcgatcagttctcagttatttggttcaattgtggtctaatag |
49591523 |
T |
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| Q |
217 |
attgaatcaacttaaccatgaccaaaggtctagcaagtttgatatctggttttgtttttaaaacatttatattaacatataactcttgccttattaaaaa |
316 |
Q |
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| T |
49591522 |
attgaatcaacttaaccatgaccaaaggtctcacaagtttgatatctggttttgtttttaaaacatttatattaacatataactcttgccttattaaaaa |
49591423 |
T |
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| Q |
317 |
cagataaaaaatgatatattatcaagattcattgaattgggagaaaaccatgcaagtgacaaaagtttgagagacgttgttttgaactttgtgattgctg |
416 |
Q |
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| T |
49591422 |
cagataaaaaatgatatattatcaagattcattgaattgggagaaaaccatgcaagtgacaaaagtttgagagacgttgttttgaactttgtgattgctg |
49591323 |
T |
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| Q |
417 |
gtagagacacaacggcaacaactctatcatgggctatatatatggtgatgacacattcccatgttgctgaaaaactttactcagagctcaaaacttttga |
516 |
Q |
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| T |
49591322 |
gtagagacacaacggcaacaactctatcatgggctatatatatggtgatgacacattcccatgttgctgaaaaactttactcagagctcaaaacttttga |
49591223 |
T |
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| Q |
517 |
gaagaatcaagcaaaggaagagaatgttacat |
548 |
Q |
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| T |
49591222 |
ggagaatcaagcaaaggaagagaatgttacat |
49591191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 271 - 546
Target Start/End: Original strand, 7236554 - 7236830
Alignment:
| Q |
271 |
tttttaaaacatttatattaacatataactcttgccttattaaaaa-cagataaaaaatgatatattatcaagattcattgaattgggagaaaaccatgc |
369 |
Q |
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| T |
7236554 |
tttttaaaacatttatattaacatataactcttatcttataaaaaaacagatgaaaaatgatatattatcaagattcattgaattgggagaaaaccatgc |
7236653 |
T |
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| Q |
370 |
aagtgacaaaagtttgagagacgttgttttgaactttgtgattgctggtagagacacaacggcaacaactctatcatgggctatatatatggtgatgaca |
469 |
Q |
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| T |
7236654 |
aactgacaaaagtttaagagacgttgttttgaactttgtggttgctggtagagacacaactgcaacaactctatcatgggctatatatatggtgatgaca |
7236753 |
T |
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| Q |
470 |
cattcccatgttgctgaaaaactttactcagagctcaaaacttttgagaagaatcaagcaaaggaagagaatgttac |
546 |
Q |
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| T |
7236754 |
cattcccatgttgctcaaaaactttacttggagctcaaaacttttgaggagaatcaagcaaaggaagagaatgttac |
7236830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 323 - 537
Target Start/End: Complemental strand, 30876966 - 30876754
Alignment:
| Q |
323 |
aaaaatgatatattatcaagattcattgaattgggagaaaaccatgcaagtgacaaaagtttgagagacgttgttttgaactttgtgattgctggtagag |
422 |
Q |
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| T |
30876966 |
aaaaattatatattattaagattcatataattgggagaaaacaatgcaattgaaaaaagtcagcgag--gttattttgaagtttgtaattgctggttggg |
30876869 |
T |
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| Q |
423 |
acacaacggcaacaactctatcatgggctatatatatggtgatgacacattcccatgttgctgaaaaactttactcagagctcaaaacttttgagaagaa |
522 |
Q |
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| T |
30876868 |
acaccactgaaacaactctatcacgggccatttatatgttaattagacatgctcatgttgctgacaaactttacttatagctcaaaacttttgaggtgaa |
30876769 |
T |
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| Q |
523 |
tcaagcaaaggaaga |
537 |
Q |
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| T |
30876768 |
tcgagcaaagaaaga |
30876754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 7236451 - 7236512
Alignment:
| Q |
129 |
tcaactagtggagttcgtaactggtcaatatgtcgatccatcaactgcgatcagttctcagt |
190 |
Q |
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| T |
7236451 |
tcaactagttgagttcgtaactggtcaataagtagattgaccaaccgcgatcaattctcagt |
7236512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 110
Target Start/End: Original strand, 7236240 - 7236272
Alignment:
| Q |
78 |
cgatgtgaaccttaatattgcgccaaaatgcta |
110 |
Q |
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| T |
7236240 |
cgatgtgaaccttaatattacgccaaaatgcta |
7236272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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