View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20278_low_1 (Length: 782)
Name: NF20278_low_1
Description: NF20278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20278_low_1 |
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| [»] scaffold0134 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 7839933 - 7840259
Alignment:
| Q |
19 |
ggatcgtctctgaagacgttgattccgtgacggagaagtgaacggtagagatgatcggtgaaggagtagcgagttctgcctctgaaactgaggaaaacgt |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7839933 |
ggattgtctctgaagacgttgattccgtgacggagaagtgaacggtagagatgatcggtgaaggagtagcgagttctgcctctgaaactgaggaaaacgt |
7840032 |
T |
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| Q |
119 |
cgtgggtgaagtcttcgtcttcgtgattctccattagcgtgatgattatggtatgttttgattagtggaactgtagaaatgtttgtttgagttttaaatc |
218 |
Q |
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| T |
7840033 |
cgtgagtgaagtcttcgtcttcgtgattctccattagcgtgatgattatggtatgttttgattagtggaactgtagaaatgtttgtttgagttttaaatc |
7840132 |
T |
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| Q |
219 |
aagtgtggagcttcaaaagtcagaagaaagcgggatcactatgaaccggtctacatgatgatgcttgctgagttaattggatttcattttttaagtgttt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7840133 |
aagtgtggagcttcaaaagtcagaagaaagcgggatcacaatgaaccggtctacatgatgatgcttgctgagttaattggatttcattttttaagtgttt |
7840232 |
T |
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| Q |
319 |
tgttaatcacctgagacactcattcta |
345 |
Q |
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| T |
7840233 |
tgttaatcacctgagacactcattcta |
7840259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 393 - 698
Target Start/End: Original strand, 7840259 - 7840570
Alignment:
| Q |
393 |
aggcaataattacaaatatttaaaagagtttttagagacacttgttaacatttcactttaattaataatattatgttattattacttaatcttttttatn |
492 |
Q |
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| T |
7840259 |
aggcaataattacaaatatttaaaagagtttttagagacactcgttaacatttcactttaattaataatattatgtttttattacttaatcttttttata |
7840358 |
T |
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| Q |
493 |
nnnnnnnn------ttaatgatgattggataagtactaaacttaattgttttattgatcactgtcggtactcttctctcttgtcaaccagctagatgttc |
586 |
Q |
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| T |
7840359 |
aaaaaaaaaaaaaattaatgatgattggataagtactaaacttaattgttttattgatcactgccggtactcttctctcttgtcaaccagctagatgttc |
7840458 |
T |
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| Q |
587 |
ctcccaagtgttagatatttatttagtagcggtcttggacactattcacattatttggtgggcaaggaattctttgaggttctcaaatgcctactgtaca |
686 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7840459 |
ctcccaagtgttagatatttatttagtagcggtcttgcacactattcacattatttggtgggcaaggaattctttgaggttctcaaatgcctattgtaca |
7840558 |
T |
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| Q |
687 |
ttcagctaaggt |
698 |
Q |
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|||||||||||| |
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| T |
7840559 |
ttcagctaaggt |
7840570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 7755809 - 7755923
Alignment:
| Q |
22 |
tcgtctctgaagacgttgattccgtgacggagaagtgaacggtagagatgatcggtgaaggagtagcgagttctgcctctgaaactgaggaaaacgtcgt |
121 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| || ||||| |||| |
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| T |
7755809 |
tcgtctctgaaaacgttgattccttgacggagaagtgaacggtagagatgatcggtgaaagagtagcgtgttccgcctctgaaactcagaaaaacatcgt |
7755908 |
T |
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| Q |
122 |
gggtgaagtcttcgt |
136 |
Q |
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| T |
7755909 |
gagtgaaatcttcgt |
7755923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 7763263 - 7763371
Alignment:
| Q |
20 |
gatcgtctctgaagacgttgattccgtgacggagaagtgaacggtagagatgatcggtgaaggagtagcgagttctgcctctgaaactgaggaaaacgtc |
119 |
Q |
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||||||||||||||||||||||||| ||||||||||| || | ||||||||||| ||||||||||||||||||| |||||||||||| || || | ||| |
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| T |
7763263 |
gatcgtctctgaagacgttgattccatgacggagaagagagtgatagagatgatccgtgaaggagtagcgagttccgcctctgaaactcagaaatatgtc |
7763362 |
T |
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| Q |
120 |
gtgggtgaa |
128 |
Q |
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| T |
7763363 |
gtgtgtgaa |
7763371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 7756000 - 7756079
Alignment:
| Q |
203 |
gtttgagttttaaatcaagtgtggagcttcaaaagtcagaagaaagcgggatcactatgaaccggtctacatgatgatgc |
282 |
Q |
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| T |
7756000 |
gtttaagttttaaatgaagtgtggagcttcaaaagtcagaagaatgcgggattacaaagaaacggtctacatgatgatgc |
7756079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 512 - 768
Target Start/End: Original strand, 1531 - 1796
Alignment:
| Q |
512 |
tggataagtactaaacttaattgttttattgatc-----actgtcggtactcttctctcttgtcaaccagctagatgttcctcccaagtgttagatattt |
606 |
Q |
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|||||| || ||||||| || ||||||||||||| |||||||| ||||| || ||||||| |||||| |||| || ||||||||||| || |||| |
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| T |
1531 |
tggataggtgctaaactgaactgttttattgatcgttctactgtcggcactctcctatcttgtcggccagctcgatgctcatcccaagtgttggagattt |
1630 |
T |
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| Q |
607 |
atttagtagcggtcttggacactattcacattatttggtgggcaaggaattctttgaggttctcaaatg-----cctactgtacattcagctaaggtccg |
701 |
Q |
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| T |
1631 |
acttagcagcggt-ttacacactatccacactatttggtgggcacggaactctttgaggttctcagatgtactaccttctatacattcagccaaggttcg |
1729 |
T |
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| Q |
702 |
tatacactcatttatagcaatctcagaaaatgtttctaagggtaacagtttaccttctgactctgtg |
768 |
Q |
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||| ||||| |||| ||||| |||| ||||||||| |||||| |||| |||||||| || |||||| |
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| T |
1730 |
tattcactctcttattgcaatgtcaggaaatgtttcaaagggtcacagcttaccttccgattctgtg |
1796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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