View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20278_low_10 (Length: 454)
Name: NF20278_low_10
Description: NF20278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20278_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 20 - 441
Target Start/End: Original strand, 49590793 - 49591214
Alignment:
| Q |
20 |
agctgcatcagacccccaattatactccattcttcccatcgaatatggaacataagttaccatccctcctgcttttatttttgtaccatccggcaacaca |
119 |
Q |
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| T |
49590793 |
agctgcatcaggcccccaattatactccattcttcccatcgaatatggaacataagttaccatccctcctgcttttatttttgtaccatccggcaacaca |
49590892 |
T |
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| Q |
120 |
tcatcctctatcacacccttgggatccttcaatcaacaattgatatttgcacaaaaacattattagttattgatatatttaaatgtgtgtgactgaatac |
219 |
Q |
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| T |
49590893 |
tcatcctctatcacacccttgggatccttcaatcaacaattgatatttgcactaaaacattattagttattgatatatttaaatgtgtgtgactgaatac |
49590992 |
T |
|
| Q |
220 |
aatgtgcaatgtggccacgcacaacctagacccaaaaaatgcatacctgaggaactgccggatacaatcttagagtctcagttatgactgcatgcaaata |
319 |
Q |
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| T |
49590993 |
aatgtgcaatgtggccacgcacaacctagacccaaaaaatgcatacctgaggaactgccggatacaatcttagagtctcagttatgactgcatgcaaata |
49591092 |
T |
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| Q |
320 |
atgcaacttctctagtgaatctttattcaataactttgaaaattgtactaccctttgattgaacaattcaaggtcatctttatcatcacattgaggcaat |
419 |
Q |
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| T |
49591093 |
atgcaacttctctagtgaatctttattcaataactttgaaaattgtactaccctttgattgaacaattcaaggtcatctttatcatcacattgaggcaat |
49591192 |
T |
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| Q |
420 |
gtaacattctcttcctttgctt |
441 |
Q |
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| T |
49591193 |
gtaacattctcttcctttgctt |
49591214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 7237467 - 7237299
Alignment:
| Q |
20 |
agctgcatcagacccccaattatactccattcttcccatcgaatatggaacataagttaccatccctcctgcttttatttttgtaccatccggcaacaca |
119 |
Q |
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||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
7237467 |
agctgcatcaggcccccagttatactccattcttcccattgaatatggaacataagttaccatccctcctgcttttattttggtaccatctggcaacaca |
7237368 |
T |
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| Q |
120 |
tcatcctctatcacacccttgggatccttcaatcaacaattgatatttgcacaaaaacattattagtta |
188 |
Q |
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| T |
7237367 |
tcatcctctatcacacccttgggatccttcaatcaacaattgatatttgcacaaaaacattattagtta |
7237299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 246 - 441
Target Start/End: Complemental strand, 7237004 - 7236809
Alignment:
| Q |
246 |
tagacccaaaaaatgcatacctgaggaactgccggatacaatcttagagtctcagttatgactgcatgcaaataatgcaacttctctagtgaatctttat |
345 |
Q |
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|||| |||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7237004 |
tagatccaaaaaatgcatacctgaggaaccgcaggatacaatcttagtgtctcagttatgactgcatgcaaataatgcaacttctctagtgaatctttat |
7236905 |
T |
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| Q |
346 |
tcaataactttgaaaattgtactaccctttgattgaacaattcaaggtcatctttatcatcacattgaggcaatgtaacattctcttcctttgctt |
441 |
Q |
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| T |
7236904 |
tcaataactttgaaaattgtacaactctttgattgaataatttagggtcatctttatcatcatactgaggcaaggtaacattctcttcctttgctt |
7236809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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