View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20278_low_11 (Length: 374)
Name: NF20278_low_11
Description: NF20278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20278_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 24548422 - 24548762
Alignment:
| Q |
19 |
cattacataattatatttcaatttgttcctttaacgtaacgtaatttaaacattgaagtatattttctatgttttctttagtaatgtatattttctatgg |
118 |
Q |
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| T |
24548422 |
cattacacaattatatttcaatttgttcctttaac-----gtaatttaaacattgaagtatattttctatgttttctttagtaatgtatattttctatgg |
24548516 |
T |
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| Q |
119 |
tgagcagcttgataattatacacactcatttttcaaccacttccaaaaatataactgatttatcgacccacaaatatgtttaatgtgtctgcaattactt |
218 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
24548517 |
tgagcagcttgataattacacacactcatttttcaaccacttccaaaaatataactgatttatcga-ccacaaatatgttgaatgtgtctgcaattactt |
24548615 |
T |
|
| Q |
219 |
tactacacaaaatggtaaagtatgacttttttaaagagtttatgcaaaaattatgagtacaaatatat-aaaaaatatatcaacacccacgcattcattt |
317 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
24548616 |
tactacacaaaatggtaaagtatgactttttt-aagagtttattcaaaaattatgagtacaaatatataaaaaaatatatcaacacccacgcattcaatt |
24548714 |
T |
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| Q |
318 |
tcgctttactctttcttcacaaaccttaactgtcaccacttttcttct |
365 |
Q |
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|| |||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
24548715 |
tctctttactctttcttcacaaatcttaactgtcatcacttttcttct |
24548762 |
T |
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