View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20278_low_14 (Length: 353)

Name: NF20278_low_14
Description: NF20278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20278_low_14
NF20278_low_14
[»] chr2 (4 HSPs)
chr2 (1-337)||(1747983-1748315)
chr2 (70-138)||(29035311-29035379)
chr2 (160-242)||(11764869-11764951)
chr2 (70-130)||(29141842-29141902)
[»] chr4 (2 HSPs)
chr4 (158-242)||(10393898-10393982)
chr4 (71-119)||(9046008-9046056)
[»] chr8 (5 HSPs)
chr8 (4-68)||(32017803-32017867)
chr8 (70-125)||(25382950-25383005)
chr8 (70-130)||(8995158-8995218)
chr8 (4-68)||(8995238-8995302)
chr8 (70-130)||(8996534-8996593)
[»] chr5 (3 HSPs)
chr5 (70-138)||(22578845-22578913)
chr5 (165-242)||(20487047-20487124)
chr5 (70-130)||(20117663-20117723)
[»] chr1 (3 HSPs)
chr1 (70-130)||(9246811-9246871)
chr1 (70-138)||(25030431-25030499)
chr1 (158-242)||(32540592-32540676)
[»] chr3 (2 HSPs)
chr3 (158-244)||(52499197-52499283)
chr3 (4-68)||(34661011-34661075)
[»] chr7 (3 HSPs)
chr7 (199-244)||(6961120-6961165)
chr7 (70-119)||(22499693-22499742)
chr7 (70-130)||(4248829-4248889)
[»] chr6 (1 HSPs)
chr6 (70-119)||(7536655-7536704)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 1748315 - 1747983
Alignment:
Q  1 cgagagatttgaaactcgtgtaaattagaaggtctataatcctctgctaaccgatcaagtataagcatgacttttgaaaccgcaaaaaactaaaacagtt 100  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1748315 cgagagatttgaaactcgttaaaattagaaggtctataatcctctgctaaccgaccaagtataagcatgacttttgaaaccgcaaaaaactaaaacagtt 1748216  T
Q  101 gaaaaattatttaaagtcttgcaaagtagatttataatctaatttataac---nnnnnnngggtggaccactacaccactttgtagatatttaaataagt 197  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||             |||||||||||||||||||||| ||||||||||||||    
T  1748215 gaaaaattatttaaagtcttgcaaaatagatttataatttaatttataacttttttttttttatggaccactacaccactttgtaaatatttaaataagt 1748116  T
Q  198 tgaaaactaaaaccgacacaacgttatataaaatcttgcaaaataaagttatagttgcatcattgcatgcaacctccctcccctttatgagaatcttcgc 297  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||| ||||| |||||||    
T  1748115 tgaaaactaaaaccgacacaatgttgtataaaatcttgcaaaataaa-------ttgcatcattgcatgcaacctccctcccctttctgagattcttcgc 1748023  T
Q  298 caaatccacaacaacaattatgatgatttccttgcaaaaa 337  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1748022 caaatccacaacaacaattatgatgatttccttgcaaaaa 1747983  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 29035311 - 29035379
Alignment:
Q  70 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaagtagatttataat 138  Q
    ||||||||||||||| ||||||| ||||||||||||||| ||||||| |||||||| ||||| ||||||    
T  29035311 acttttgaaaccgcagaaaactataacagttgaaaaattgtttaaagacttgcaaaatagatctataat 29035379  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 11764951 - 11764869
Alignment:
Q  160 gtggaccactacaccactttgtagatatttaaataagttgaaaactaaaaccgacacaacgttatataaaatcttgcaaaata 242  Q
    ||||||||||||||||||||| ||  |||| ||| |    |||  |||||||||||||| ||| |||||||||||||||||||    
T  11764951 gtggaccactacaccactttgcaggaatttgaatcaaccaaaacataaaaccgacacaaagttgtataaaatcttgcaaaata 11764869  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 29141842 - 29141902
Alignment:
Q  70 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaagtaga 130  Q
    ||||||||||||||  |||| |||||  ||||||||||| |||||||||| ||||| ||||    
T  29141842 acttttgaaaccgccgaaaattaaaattgttgaaaaattgtttaaagtctcgcaaaataga 29141902  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 242
Target Start/End: Complemental strand, 10393982 - 10393898
Alignment:
Q  158 gggtggaccactacaccactttgtagatatttaaataagttgaaaactaaaaccgacacaacgttatataaaatcttgcaaaata 242  Q
    |||||| ||||||||||||||||| || |||| ||| ||  |||| |||||||||||||||  ||||||||||||| ||||||||    
T  10393982 gggtgggccactacaccactttgtggaaatttgaatcagacgaaacctaaaaccgacacaaaattatataaaatctcgcaaaata 10393898  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 9046008 - 9046056
Alignment:
Q  71 cttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtct 119  Q
    |||||||||||||  ||||||||||   |||||||||||||||||||||    
T  9046008 cttttgaaaccgccgaaaactaaaatcattgaaaaattatttaaagtct 9046056  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 32017803 - 32017867
Alignment:
Q  4 gagatttgaaactcgtgtaaattagaaggtctataatcctctgctaaccgatcaagtataagcat 68  Q
    |||||||||||| | |||||||| |||||||||||| |||| ||||||   ||||||||||||||    
T  32017803 gagatttgaaacccatgtaaatttgaaggtctataaacctccgctaacatgtcaagtataagcat 32017867  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 25382950 - 25383005
Alignment:
Q  70 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaa 125  Q
    |||||||||||||| |||||||| ||| ||||||||||| || ||||||| |||||    
T  25382950 acttttgaaaccgcgaaaaactataaccgttgaaaaattgttcaaagtctcgcaaa 25383005  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 8995218 - 8995158
Alignment:
Q  70 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaagtaga 130  Q
    |||||||||| |||  |||||||||||||||||||||||  | ||||||| ||||| ||||    
T  8995218 acttttgaaatcgctgaaaactaaaacagttgaaaaattgctcaaagtctcgcaaaataga 8995158  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 8995302 - 8995238
Alignment:
Q  4 gagatttgaaactcgtgtaaattagaaggtctataatcctctgctaaccgatcaagtataagcat 68  Q
    |||||||||||| | || ||||| |||||||||||| |||||||||||    |||||||||||||    
T  8995302 gagatttgaaacccatgcaaattcgaaggtctataagcctctgctaacgtgccaagtataagcat 8995238  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 8996593 - 8996534
Alignment:
Q  70 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaagtaga 130  Q
    |||||||||||||| |||||||||||||  ||||||||| |||||| ||| ||||| ||||    
T  8996593 acttttgaaaccgccaaaaactaaaaca-ctgaaaaattgtttaaaatctcgcaaaataga 8996534  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 22578845 - 22578913
Alignment:
Q  70 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaagtagatttataat 138  Q
    ||||||||||| |  |||||||| ||| ||||||||||| |||||||||| | ||| ||||||||||||    
T  22578845 acttttgaaactgtcaaaaactagaaccgttgaaaaattgtttaaagtctcgtaaaatagatttataat 22578913  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 20487124 - 20487047
Alignment:
Q  165 ccactacaccactttgtagatatttaaataagttgaaaactaaaaccgacacaacgttatataaaatcttgcaaaata 242  Q
    |||||||||||||||| ||  ||||  || ||  |||| |||||||||||||||  || |||||||||||||||||||    
T  20487124 ccactacaccactttgcaggaatttggatcagccgaaacctaaaaccgacacaaaattgtataaaatcttgcaaaata 20487047  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 20117723 - 20117663
Alignment:
Q  70 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaagtaga 130  Q
    ||||||||||||||  ||||||||||  |||||||| || |||||||||| ||||| ||||    
T  20117723 acttttgaaaccgccgaaaactaaaatcgttgaaaagttgtttaaagtctcgcaaaataga 20117663  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 9246811 - 9246871
Alignment:
Q  70 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaagtaga 130  Q
    ||||||||||||||  ||||||| ||| ||||||||| | |||||||||||||||| ||||    
T  9246811 acttttgaaaccgcggaaaactataaccgttgaaaaaatgtttaaagtcttgcaaaataga 9246871  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 25030499 - 25030431
Alignment:
Q  70 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaagtagatttataat 138  Q
    |||||||||| |||  ||||||| ||| ||| ||||||||||||||||||| |||| ||||| ||||||    
T  25030499 acttttgaaagcgcggaaaactataaccgttaaaaaattatttaaagtcttccaaaatagatctataat 25030431  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 32540592 - 32540676
Alignment:
Q  158 gggtggaccactacaccactttgtagatatttaaataagttgaaaactaaaaccgacacaacgttatataaaatcttgcaaaata 242  Q
    |||||| ||| ||||||||||||| |||||||  ||||   |||| |||||||||||||||  || |||||||||| | ||||||    
T  32540592 gggtgggccattacaccactttgtggatatttggataaaccgaaacctaaaaccgacacaaaattgtataaaatctcgtaaaata 32540676  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 52499197 - 52499283
Alignment:
Q  158 gggtggaccactacaccactttgtagatatttaaataagttgaaaactaaaaccgacacaacgttatataaaatcttgcaaaataaa 244  Q
    |||||||||||||||||||||||  || ||||| || ||  ||||  ||||||| ||||||  || |||||||||| ||||||||||    
T  52499197 gggtggaccactacaccactttgcggaaatttagatcagccgaaatttaaaaccaacacaaaattgtataaaatctcgcaaaataaa 52499283  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 34661075 - 34661011
Alignment:
Q  4 gagatttgaaactcgtgtaaattagaaggtctataatcctctgctaaccgatcaagtataagcat 68  Q
    |||||||||||||| |||||||| ||| |||||||| |||| ||||||    |||||||||||||    
T  34661075 gagatttgaaactcatgtaaattcgaatgtctataagcctccgctaacatgacaagtataagcat 34661011  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 6961165 - 6961120
Alignment:
Q  199 gaaaactaaaaccgacacaacgttatataaaatcttgcaaaataaa 244  Q
    |||| |||||||||||||||  || |||||||||||||||||||||    
T  6961165 gaaacctaaaaccgacacaaaattgtataaaatcttgcaaaataaa 6961120  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 22499693 - 22499742
Alignment:
Q  70 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtct 119  Q
    ||||||||||||||| ||||||| |||  |||||||||| ||||||||||    
T  22499693 acttttgaaaccgcagaaaactataaccattgaaaaattgtttaaagtct 22499742  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 4248829 - 4248889
Alignment:
Q  70 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaagtaga 130  Q
    ||||||||||||||  ||||||||||| |||| |  ||| |||||||||||||||| ||||    
T  4248829 acttttgaaaccgccgaaaactaaaaccgttggaggattgtttaaagtcttgcaaaataga 4248889  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 7536704 - 7536655
Alignment:
Q  70 acttttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtct 119  Q
    ||||||||||||||  ||||||| ||| ||||||||||| ||||||||||    
T  7536704 acttttgaaaccgcggaaaactataaccgttgaaaaattgtttaaagtct 7536655  T

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