View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20278_low_20 (Length: 247)
Name: NF20278_low_20
Description: NF20278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20278_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 51 - 244
Target Start/End: Complemental strand, 27329511 - 27329322
Alignment:
| Q |
51 |
ttaaatagtggaccgatcaggatttcttattagcaaaaaccacattacataaccatacaccaaattataattccacgcattaatttacaagttaaaacta |
150 |
Q |
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| T |
27329511 |
ttaaaaagtggaccgatcaggatttcttattagcaaaaaccacgttacataaccatacaccaaattataattccacgcattaatttacaagttaaaacta |
27329412 |
T |
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| Q |
151 |
aattttgaaagaccaaacttacaattattacttatgcaagcaagcataacaaagtttttatttaaattcgaatataatctaagcaagaatttct |
244 |
Q |
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| T |
27329411 |
aattttgaaagaccaaacttacaattattacttatgca----agcataacaaagtttttatttaaattcgaatataatctaagcaagaatttct |
27329322 |
T |
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