View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20278_low_22 (Length: 213)
Name: NF20278_low_22
Description: NF20278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20278_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 3299775 - 3299954
Alignment:
| Q |
19 |
gaaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3299775 |
gaaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacggtgcagacttgacacttaatccgaaaaacaagt |
3299874 |
T |
|
| Q |
119 |
taacaagacgaaaaataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttccttggatagatct |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299875 |
taacaagacgaaaaataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttccttggatagatct |
3299954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 43082897 - 43083008
Alignment:
| Q |
33 |
ctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaacaagacgaaaa |
132 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||||||| | ||||||| |||||||||||||||||||| ||||||||||| ||| |||||| || |
|
|
| T |
43082897 |
ctgccaccgtcgatctagaacccagttctgagaacaaaagctaagagatgaaggtgcagacttgacacttaatatgaaaaacaagtaaactagacgagaa |
43082996 |
T |
|
| Q |
133 |
ataaaagtacta |
144 |
Q |
| |
|
||| || ||||| |
|
|
| T |
43082997 |
atagaaatacta |
43083008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 144
Target Start/End: Complemental strand, 43067938 - 43067827
Alignment:
| Q |
33 |
ctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaacaagacgaaaa |
132 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||||||| | ||||||| |||||||||||||||||||| ||||||||||| ||| |||| | || |
|
|
| T |
43067938 |
ctgccaccgtcgatctagaacccagttctgagaacaaaagctaagagatgaaggtgcagacttgacacttaatatgaaaaacaagtaaactagactagaa |
43067839 |
T |
|
| Q |
133 |
ataaaagtacta |
144 |
Q |
| |
|
||| || ||||| |
|
|
| T |
43067838 |
atagaaatacta |
43067827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 43079958 - 43079856
Alignment:
| Q |
20 |
aaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagtt |
119 |
Q |
| |
|
|||||||| |||| |||||| |||||| |||||||| | ||||||||| | ||||||| ||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
43079958 |
aaaagaaaaagccttgccacagtcgatatagaacccaatcctgggaacaagggctgcgagacgacggtgcagacttgacacttaatctgaaaaacaagtt |
43079859 |
T |
|
| Q |
120 |
aac |
122 |
Q |
| |
|
||| |
|
|
| T |
43079858 |
aac |
43079856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 43044053 - 43044164
Alignment:
| Q |
33 |
ctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaacaagacgaaaa |
132 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||| ||| | ||||||| |||||||||||||||||||| ||||||||||| ||| ||| || || |
|
|
| T |
43044053 |
ctgccaccgtcgatctagaacccagttctgagaacacaagctaagagatgaaggtgcagacttgacacttaatatgaaaaacaagtaaactagaagagaa |
43044152 |
T |
|
| Q |
133 |
ataaaagtacta |
144 |
Q |
| |
|
||| || ||||| |
|
|
| T |
43044153 |
atagaaatacta |
43044164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 38139079 - 38139007
Alignment:
| Q |
32 |
cctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaa |
104 |
Q |
| |
|
||||||||| || ||| |||| |||||| | |||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
38139079 |
cctgccaccatcaatctagaagccagttcttggaacaaaagctgtgagatgacggtgcagacttgacacttaa |
38139007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 4230525 - 4230618
Alignment:
| Q |
34 |
tgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaacaagac |
127 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||| || |||||||| |||||||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
4230525 |
tgccaccgtcgatctagaacccagttctgggaacaaaagctgggagatgacggtgcagacttcacacttaatccaaaaaacaacttaacaagac |
4230618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 19965696 - 19965623
Alignment:
| Q |
20 |
aaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagac |
93 |
Q |
| |
|
||||||||| |||||||||| ||||||| |||| |||||| ||||||| |||| ||| ||| ||||||||||| |
|
|
| T |
19965696 |
aaaagaaatggccctgccactgtcgatctagaagccagttctgggaacgaaagctgcaagacaacagtgcagac |
19965623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 4618729 - 4618826
Alignment:
| Q |
20 |
aaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagtt |
119 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||||| |||| | ||||||||| | || ||||||||||||||||||||||||| | | |||||||||| |
|
|
| T |
4618729 |
aaaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaact--gatatgacagtgcagacttgacacttaacctgcaaaacaagtt |
4618826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University