View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20278_low_3 (Length: 555)
Name: NF20278_low_3
Description: NF20278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20278_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 7839933 - 7840259
Alignment:
| Q |
19 |
ggatcgtctctgaagacgttgattccgtgacggagaagtgaacggtagagatgatcggtgaaggagtagcgagttctgcctctgaaactgaggaaaacgt |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7839933 |
ggattgtctctgaagacgttgattccgtgacggagaagtgaacggtagagatgatcggtgaaggagtagcgagttctgcctctgaaactgaggaaaacgt |
7840032 |
T |
|
| Q |
119 |
cgtgggtgaagtcttcgtcttcgtgattctccattagcgtgatgattatggtatgttttgattagtggaactgtagaaatgtttgtttgagttttaaatc |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7840033 |
cgtgagtgaagtcttcgtcttcgtgattctccattagcgtgatgattatggtatgttttgattagtggaactgtagaaatgtttgtttgagttttaaatc |
7840132 |
T |
|
| Q |
219 |
aagtgtggagcttcaaaagtcagaagaaagcgggatcactatgaaccggtctacatgatgatgcttgctgagttaattggatttcattttttaagtgttt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7840133 |
aagtgtggagcttcaaaagtcagaagaaagcgggatcacaatgaaccggtctacatgatgatgcttgctgagttaattggatttcattttttaagtgttt |
7840232 |
T |
|
| Q |
319 |
tgttaatcacctgagacactcattcta |
345 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
7840233 |
tgttaatcacctgagacactcattcta |
7840259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 393 - 541
Target Start/End: Original strand, 7840259 - 7840413
Alignment:
| Q |
393 |
aggcaataattacaaatatttaaaagagtttttagagacacttgttaacatttcactttaattaataatattatgttattattacttaatcttttttat- |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7840259 |
aggcaataattacaaatatttaaaagagtttttagagacactcgttaacatttcactttaattaataatattatgtttttattacttaatcttttttata |
7840358 |
T |
|
| Q |
492 |
-----nnnnnnnnnttaatgatgattggataagtactaaacttaattgttttatt |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7840359 |
aaaaaaaaaaaaaattaatgatgattggataagtactaaacttaattgttttatt |
7840413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 7755809 - 7755923
Alignment:
| Q |
22 |
tcgtctctgaagacgttgattccgtgacggagaagtgaacggtagagatgatcggtgaaggagtagcgagttctgcctctgaaactgaggaaaacgtcgt |
121 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| || ||||| |||| |
|
|
| T |
7755809 |
tcgtctctgaaaacgttgattccttgacggagaagtgaacggtagagatgatcggtgaaagagtagcgtgttccgcctctgaaactcagaaaaacatcgt |
7755908 |
T |
|
| Q |
122 |
gggtgaagtcttcgt |
136 |
Q |
| |
|
| ||||| ||||||| |
|
|
| T |
7755909 |
gagtgaaatcttcgt |
7755923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 7763263 - 7763371
Alignment:
| Q |
20 |
gatcgtctctgaagacgttgattccgtgacggagaagtgaacggtagagatgatcggtgaaggagtagcgagttctgcctctgaaactgaggaaaacgtc |
119 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| || | ||||||||||| ||||||||||||||||||| |||||||||||| || || | ||| |
|
|
| T |
7763263 |
gatcgtctctgaagacgttgattccatgacggagaagagagtgatagagatgatccgtgaaggagtagcgagttccgcctctgaaactcagaaatatgtc |
7763362 |
T |
|
| Q |
120 |
gtgggtgaa |
128 |
Q |
| |
|
||| ||||| |
|
|
| T |
7763363 |
gtgtgtgaa |
7763371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 7756000 - 7756079
Alignment:
| Q |
203 |
gtttgagttttaaatcaagtgtggagcttcaaaagtcagaagaaagcgggatcactatgaaccggtctacatgatgatgc |
282 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||| ||||||| || | ||| |||||||||||||||||| |
|
|
| T |
7756000 |
gtttaagttttaaatgaagtgtggagcttcaaaagtcagaagaatgcgggattacaaagaaacggtctacatgatgatgc |
7756079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University