View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20278_low_5 (Length: 503)
Name: NF20278_low_5
Description: NF20278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20278_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 31 - 492
Target Start/End: Original strand, 32910258 - 32910713
Alignment:
| Q |
31 |
atatttctctctgtatcgttctgttccatcgttctcgccaacaacccctttcaacgttttactgcataagtcttcaccgttctttttcttcccttctgct |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32910258 |
atatttctctctgtatcgttctgttccatcgttctcgccaacaacccctttcaacgttttactgcataagtcttcaccgttctttttcttcccttctgct |
32910357 |
T |
|
| Q |
131 |
aattagttaattaattcatagcatttgtttcttttatattttcccgtgttttcnnnnnnnnnnnnnnnnnnnnnatcccgaatttgatttttctgtttct |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32910358 |
aattagttaattaattcatagcatttgtttcttttatattttcccgtgttttccttcttcttcttctt------atcccgaatttgatttttctgtttct |
32910451 |
T |
|
| Q |
231 |
cttttgaatcgttcttaaagnnnnnnncatacttcaaaggttcatgtactgttaccattcgnnnnnnncgacgaattattagggtttttgtgagatttgt |
330 |
Q |
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|||||||||||||||||||| | |||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32910452 |
cttttgaatcgttcttaaagtttttttcgtacttcaaaggttcgtgtactattaccattcgtttttttcgacgaattattagggtttttgtgagatttgt |
32910551 |
T |
|
| Q |
331 |
gttggtaataattcaaattgtgttctactgttatcatctgcatcgaagaaccctaatccacaacgaaccctaattccttcttcaatcgacaattcctgtg |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32910552 |
gttggtaataattcaaattgtgttctactgttatcatctgcatcgaagaaccctaatccacaacgaaccctaattccttcttcaatcgacaattcctgtg |
32910651 |
T |
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| Q |
431 |
attcttaaatctgcaaacaacggtttctgtgattccttcaacgatttctgctacggattcat |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32910652 |
attcttaaatctgcaaacaacggtttctgtgattccttcaacgatttctgctacggattcat |
32910713 |
T |
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