View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20278_low_7 (Length: 484)
Name: NF20278_low_7
Description: NF20278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20278_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 20 - 468
Target Start/End: Original strand, 45392359 - 45392807
Alignment:
| Q |
20 |
agaggatctcacattcacgtaatcaggaccacaactttcaaatgttaaattcagtagcctcaatcaagtaataagccaaatcaagaataaattcttagtg |
119 |
Q |
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| T |
45392359 |
agaggatctcacattcacgtaatcaggaccacaactttcaaatgttaaattcagtagcctcaatcaagcaataagccaaatcaagaataaattcttagtg |
45392458 |
T |
|
| Q |
120 |
aataagcagcaaaaaagaaattattacatctcaagtatcgccaatgcagttcgtgcaagaaacaaaaacatcaacaattaatgtgcgacagacagacaac |
219 |
Q |
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| T |
45392459 |
aataagcagcaaaaaagaaattattacatctcaagtatcgccaatgcagttcgtgcaagaaacaaaaacatcaacaattaatgtgcgacagacagacaac |
45392558 |
T |
|
| Q |
220 |
taagatcaatatgtatcataccattactaacaaaacctctaatacaaagaggctaacagaaatttaatctgnnnnnnnnctatatgctagattgttatcc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45392559 |
taagatcaatatgtatcataccattactaacaaaacctctaatacaaagaggctaacagaaatttaatctgaaaaaaaactatatgctagattgttatcc |
45392658 |
T |
|
| Q |
320 |
attttatatattaggaaatctttaataatgcttgatatgtaaaatcataacattatgagttgagttaacaaatcaaatcacaagcattcacgaagttaga |
419 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45392659 |
attttatataataggaaatctttaataatgcttgatatgtaaaatcataacattatgagttgagttaacaaatcaaatcacaagcattcacgaagttaga |
45392758 |
T |
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| Q |
420 |
aatataacattatagcttacttcttttggatgtgttctgaacctctgag |
468 |
Q |
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| T |
45392759 |
aatataacagtatagcttaattcttttggatgtgttctgaacctctgag |
45392807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 299 - 407
Target Start/End: Original strand, 52739347 - 52739455
Alignment:
| Q |
299 |
ctatatgctagattgttatccattttatatattaggaaatctttaataatgcttgatatgtaaaatcataacattatgagttgagttaacaaatcaaatc |
398 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
52739347 |
ctatatgctagattgttatccattttatatgttaggaaatctttaagaatgcttgataggtaaaatcataacattatgagttgagttaacaaaccaaatc |
52739446 |
T |
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| Q |
399 |
acaagcatt |
407 |
Q |
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||||||||| |
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| T |
52739447 |
acaagcatt |
52739455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 52739234 - 52739307
Alignment:
| Q |
22 |
aggatctcacattcacgtaatcaggaccacaactttcaaatgttaaattcagtagcctcaatcaagtaataagc |
95 |
Q |
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||||||||||||||| | | |||||||||||| ||||||| ||||||||||||||| ||||| | ||||||| |
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| T |
52739234 |
aggatctcacattcatgcagtcaggaccacaattttcaaacattaaattcagtagccataatcatgcaataagc |
52739307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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