View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20278_low_8 (Length: 475)
Name: NF20278_low_8
Description: NF20278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20278_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 15 - 469
Target Start/End: Original strand, 553519 - 553973
Alignment:
| Q |
15 |
tcttctcaaagttggaaaagatnnnnnnncgcctaatactctaaacttaggcaaaccttctgagctagcaagaacattgtcaacaggacttaaggattac |
114 |
Q |
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| T |
553519 |
tcttctcaatgttggaaaagataaaaaaacgcctaatactctaaacttaggcaaaccttctgagttagcaagaacattgtcaacaggacttaaggattac |
553618 |
T |
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| Q |
115 |
tattactttcaaacagcacatattgtagtcccaggttgtgagcccattgggttgctgacagtaaaataactgcctcacactcgtgaatagctaaaaccgg |
214 |
Q |
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| T |
553619 |
tattactttcaaacagcacatattgtagtcccaggttgtgagcccattggcttgctgacagtaaaataactgcctcacactcgtgaatagctaaaaccgg |
553718 |
T |
|
| Q |
215 |
atgaaaccagcccgaaagcgccccaacaaactctcctgcctcattctggatgcaacagccatagcttggtatacccaagtttgtacgaaaactagtactc |
314 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
553719 |
atgaaaccagcccgaaagcaccccaacaaactctcctgcctcgttctggatgcaacagccatagcttggcatacccaagtttgtacgaaaactagcactc |
553818 |
T |
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| Q |
315 |
acattgcactttcctggaggtggtttctgccacgagttctgctatccctgctgctcacatttggggctgttattattcttcgactcttgtgctgcaaaca |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
553819 |
acattgcactttcctggaggtggtttctgccacgagttctgctatccctgctgctcacatttggggctgttattattcttggactcttgtgctgcaaaca |
553918 |
T |
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| Q |
415 |
actcctgtcacgcatattgcaccctgttacaaatctgctcggtattactcctatg |
469 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
553919 |
actcctgtcacgcatattgcaccctgttacaaatctgctcggcattactcctatg |
553973 |
T |
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