View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20278_low_9 (Length: 455)

Name: NF20278_low_9
Description: NF20278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20278_low_9
NF20278_low_9
[»] chr4 (10 HSPs)
chr4 (181-294)||(30265541-30265654)
chr4 (181-294)||(30279641-30279754)
chr4 (181-294)||(30286533-30286646)
chr4 (15-105)||(30265374-30265463)
chr4 (15-105)||(30279832-30279921)
chr4 (15-105)||(30286724-30286814)
chr4 (319-444)||(30286382-30286508)
chr4 (319-415)||(30265679-30265776)
chr4 (319-415)||(30279519-30279616)
chr4 (184-219)||(46826711-46826746)
[»] chr8 (1 HSPs)
chr8 (184-219)||(17102208-17102243)
[»] chr2 (2 HSPs)
chr2 (184-219)||(14395163-14395198)
chr2 (184-216)||(35319358-35319390)
[»] chr3 (1 HSPs)
chr3 (184-216)||(49350855-49350887)


Alignment Details
Target: chr4 (Bit Score: 106; Significance: 7e-53; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 181 - 294
Target Start/End: Original strand, 30265541 - 30265654
Alignment:
Q  181 gtgataaatatttaccatttatagaatccttaacatgtgataaaactatctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactat 280  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30265541 gtgataaatatttactatttatagaatccttaacatgtgataaaactacctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactat 30265640  T
Q  281 gaaaccctacttga 294  Q
    ||||||||||||||    
T  30265641 gaaaccctacttga 30265654  T

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Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 181 - 294
Target Start/End: Complemental strand, 30279754 - 30279641
Alignment:
Q  181 gtgataaatatttaccatttatagaatccttaacatgtgataaaactatctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactat 280  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30279754 gtgataaatatttactatttatagaatccttaacatgtgataaaactacctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactat 30279655  T
Q  281 gaaaccctacttga 294  Q
    ||||||||||||||    
T  30279654 gaaaccctacttga 30279641  T

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Target: chr4; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 181 - 294
Target Start/End: Complemental strand, 30286646 - 30286533
Alignment:
Q  181 gtgataaatatttaccatttatagaatccttaacatgtgataaaactatctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactat 280  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30286646 gtgataaatatttactatttatagaatccttaacatgtgataaaactacctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactat 30286547  T
Q  281 gaaaccctacttga 294  Q
    ||||||||||||||    
T  30286546 gaaaccctacttga 30286533  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 30265374 - 30265463
Alignment:
Q  15 caaaaatttacaccatgtaacagttttaatacctctttttacattaagtnnnnnnntaagggaaaccctagcttgtgtctttatgacacat 105  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  30265374 caaaaatttacaccatgta-cagttttaatacctctttttacattaagtaaaaaaataagggaaaccctagcttgtgtctttatgacacat 30265463  T

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Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 30279921 - 30279832
Alignment:
Q  15 caaaaatttacaccatgtaacagttttaatacctctttttacattaagtnnnnnnntaagggaaaccctagcttgtgtctttatgacacat 105  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  30279921 caaaaatttacaccatgta-cagttttaatacctctttttacattaagtaaaaaaataagggaaaccctagcttgtgtctttatgacacat 30279832  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 30286814 - 30286724
Alignment:
Q  15 caaaaatttacaccatgtaacagttttaatacctctttttacatt-aagtnnnnnnntaagggaaaccctagcttgtgtctttatgacacat 105  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||    
T  30286814 caaaaatttacaccatgta-cagttttaatacctctttttacattaaagtaaaaaaataagggaaaccctagcttgtgtctttatgacacat 30286724  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 319 - 444
Target Start/End: Complemental strand, 30286508 - 30286382
Alignment:
Q  319 gttgttaacaattgattgaatgatcccttnnnnnnnncaattgattgaatgatattgtgnnnnnnnn-atgacttcacatgttgtgtttataattattnn 417  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||         ||||||||||||||||||||||||||||||      
T  30286508 gttgttaacaattgattgaatgatcccttaaaaaaaacaattgattgaatgatattgtgtttttttttatgacttcacatgttgtgtttataattattaa 30286409  T
Q  418 nnnnnnncattgtgtttataaattcat 444  Q
           ||||||||||||||||||||    
T  30286408 aaaaaaacattgtgtttataaattcat 30286382  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 415
Target Start/End: Original strand, 30265679 - 30265776
Alignment:
Q  319 gttgttaacaattgattgaatgatcccttnnnnnnnncaattgattgaatgatattgtg-nnnnnnnnatgacttcacatgttgtgtttataattatt 415  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  30265679 gttgttaacaattgattgaatgatcccttaaaaaaaacaattgattgaatgatattgtgtttttttttatgacttcacatgttgtgtttataattatt 30265776  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 415
Target Start/End: Complemental strand, 30279616 - 30279519
Alignment:
Q  319 gttgttaacaattgattgaatgatcccttnnnnnnnncaattgattgaatgatattgtgnnnnnnnn-atgacttcacatgttgtgtttataattatt 415  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  30279616 gttgttaacaattgattgaatgatcccttaaaaaaaacaattgattgaatgatattgtgtttttttttatgacttcacatgttgtgtttataattatt 30279519  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 46826711 - 46826746
Alignment:
Q  184 ataaatatttaccatttatagaatccttaacatgtg 219  Q
    ||||||||||||||||||| ||||||||||||||||    
T  46826711 ataaatatttaccatttatggaatccttaacatgtg 46826746  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 17102208 - 17102243
Alignment:
Q  184 ataaatatttaccatttatagaatccttaacatgtg 219  Q
    ||||||||||||||||||| ||||||||||||||||    
T  17102208 ataaatatttaccatttatggaatccttaacatgtg 17102243  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 14395163 - 14395198
Alignment:
Q  184 ataaatatttaccatttatagaatccttaacatgtg 219  Q
    |||||||||||||||||||| |||||||||||||||    
T  14395163 ataaatatttaccatttataaaatccttaacatgtg 14395198  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 35319358 - 35319390
Alignment:
Q  184 ataaatatttaccatttatagaatccttaacat 216  Q
    |||||||||||| ||||||||||||||||||||    
T  35319358 ataaatatttactatttatagaatccttaacat 35319390  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 49350855 - 49350887
Alignment:
Q  184 ataaatatttaccatttatagaatccttaacat 216  Q
    ||||||||||||||||||| |||||||||||||    
T  49350855 ataaatatttaccatttatggaatccttaacat 49350887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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