View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20279_high_4 (Length: 288)
Name: NF20279_high_4
Description: NF20279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20279_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 51729985 - 51730219
Alignment:
| Q |
7 |
actactgtgtaaacacatatgctccctgagctatttagtcattgaggttgaatctatttacttgccagtgttgcgaaagcaacttacccttattgcattt |
106 |
Q |
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| T |
51729985 |
actactgtgtaaacacatatgctccctgagctatttagtcattgaggttgaatctatttacttgccagtgttgcaaaagcaacttacccttattgcattt |
51730084 |
T |
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| Q |
107 |
ggaaatttgtatttgtagtgtagtatcattcaacagctgacaagtaatatgagataaatctgttaaaccttaaaactcttaagtaataatacgtaaatat |
206 |
Q |
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| T |
51730085 |
ggaaatttgtatttgtagtgtagtatcattcaacagctgacaagtaatatgagataaatctgttaaaccttaaaactc-taagtaataataagtaaatat |
51730183 |
T |
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| Q |
207 |
gcgagtccgtatatcttctaaactgccatttgtggt |
242 |
Q |
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| T |
51730184 |
gcgagtccgtatatcttctaaactgccatttgtggt |
51730219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 51733084 - 51733043
Alignment:
| Q |
238 |
gtggtccccatattcaagttgatagctcacccgcatctgtgc |
279 |
Q |
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| T |
51733084 |
gtggtccccatattcatgttgatagctcacccgcatctgtgc |
51733043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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