View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20279_high_6 (Length: 216)

Name: NF20279_high_6
Description: NF20279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20279_high_6
NF20279_high_6
[»] chr8 (9 HSPs)
chr8 (1-173)||(1788867-1789031)
chr8 (52-173)||(39655710-39655831)
chr8 (52-157)||(21185332-21185437)
chr8 (56-157)||(17028356-17028457)
chr8 (56-157)||(17558792-17558893)
chr8 (52-156)||(38678689-38678790)
chr8 (93-156)||(38676310-38676373)
chr8 (72-173)||(21347097-21347198)
chr8 (52-109)||(31183750-31183807)
[»] chr4 (8 HSPs)
chr4 (52-157)||(6667730-6667835)
chr4 (52-157)||(6671402-6671501)
chr4 (52-156)||(13010544-13010647)
chr4 (52-124)||(895477-895549)
chr4 (52-156)||(44643455-44643558)
chr4 (52-115)||(20058114-20058177)
chr4 (58-135)||(31767465-31767542)
chr4 (56-115)||(43287892-43287951)
[»] chr2 (9 HSPs)
chr2 (52-156)||(2590503-2590607)
chr2 (52-173)||(21189387-21189508)
chr2 (52-157)||(18739122-18739227)
chr2 (59-173)||(1043131-1043244)
chr2 (52-154)||(14433610-14433713)
chr2 (52-173)||(35969288-35969405)
chr2 (75-124)||(27083123-27083173)
chr2 (56-106)||(10941440-10941489)
chr2 (56-106)||(10947309-10947358)
[»] chr6 (8 HSPs)
chr6 (52-173)||(19697856-19697977)
chr6 (55-130)||(6591863-6591938)
chr6 (56-124)||(24044948-24045016)
chr6 (52-101)||(15518074-15518123)
chr6 (61-116)||(14579662-14579716)
chr6 (75-124)||(24041663-24041713)
chr6 (56-99)||(2936163-2936205)
chr6 (58-115)||(3835677-3835733)
[»] chr7 (12 HSPs)
chr7 (1-156)||(31210043-31210190)
chr7 (52-173)||(11673987-11674107)
chr7 (52-156)||(31206637-31206741)
chr7 (54-156)||(39426464-39426566)
chr7 (52-173)||(3850550-3850672)
chr7 (52-114)||(22301162-22301224)
chr7 (56-124)||(13815772-13815840)
chr7 (56-156)||(15569569-15569668)
chr7 (56-115)||(32352444-32352502)
chr7 (52-173)||(5434872-5434994)
chr7 (75-135)||(2609635-2609696)
chr7 (75-116)||(15169978-15170019)
[»] scaffold0014 (1 HSPs)
scaffold0014 (52-173)||(82607-82728)
[»] chr1 (13 HSPs)
chr1 (52-156)||(12141663-12141767)
chr1 (52-173)||(24981173-24981294)
chr1 (66-156)||(1953690-1953780)
chr1 (62-156)||(4242590-4242684)
chr1 (52-122)||(9111552-9111622)
chr1 (52-154)||(47580399-47580503)
chr1 (56-135)||(38825492-38825572)
chr1 (56-124)||(43254149-43254217)
chr1 (56-124)||(38828702-38828771)
chr1 (56-124)||(49387621-49387689)
chr1 (91-156)||(51465497-51465562)
chr1 (75-115)||(39197257-39197297)
chr1 (75-115)||(49390928-49390968)
[»] chr5 (5 HSPs)
chr5 (52-156)||(18594817-18594921)
chr5 (55-172)||(26703031-26703149)
chr5 (55-172)||(26972764-26972882)
chr5 (54-135)||(39292122-39292203)
chr5 (75-116)||(13291996-13292037)
[»] scaffold0028 (2 HSPs)
scaffold0028 (52-135)||(110144-110227)
scaffold0028 (52-135)||(127723-127806)
[»] scaffold0076 (1 HSPs)
scaffold0076 (52-135)||(6771-6854)
[»] chr3 (8 HSPs)
chr3 (61-140)||(11634190-11634270)
chr3 (56-116)||(9372227-9372286)
chr3 (56-115)||(42253577-42253635)
chr3 (56-124)||(19930051-19930118)
chr3 (56-116)||(2353239-2353298)
chr3 (56-135)||(26445109-26445188)
chr3 (57-115)||(14658173-14658230)
chr3 (56-104)||(19935250-19935297)
[»] scaffold0293 (1 HSPs)
scaffold0293 (58-116)||(4942-4999)


Alignment Details
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 1788867 - 1789031
Alignment:
Q  1 ataacctgccaagacagtataccattacataaacttgaggcgtaacatgtaacatagtcactgtccttgaggattttatccgcctcataagcgcatatcc 100  Q
    |||||||||||| | |||| |||||||||||||| |||||||| ||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  1788867 ataacctgccaaaa-agtaaaccattacataaacctgaggcgtgacat-------agtcactgtccttgaggattttatccgcctcataagcgcatatcc 1788958  T
Q  101 tcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgacagaacagtttaaattaatctcaa 173  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  | ||||| |||||||    
T  1788959 tcccaggatacaacagttcttccccgttatgaatcataaccggaggtgacagaacaactcaaatttatctcaa 1789031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 39655710 - 39655831
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgaca 151  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||| |||||||| ||||||    
T  39655710 acatagtcactgtccttgaggattttatccgcctcataagtgcatatcctcccatgatacaacagttcttctccgttatgaatcataaccggatgtgaca 39655809  T
Q  152 gaacagtttaaattaatctcaa 173  Q
    |||||| | ||||| |||||||    
T  39655810 gaacagctcaaatttatctcaa 39655831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 21185332 - 21185437
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgaca 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||| |||||||||||||||    
T  21185332 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccagcatataatagttcttccccgttatgaatcataaccggaggtgaca 21185431  T
Q  152 gaacag 157  Q
     |||||    
T  21185432 aaacag 21185437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 17028457 - 17028356
Alignment:
Q  56 agtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgacagaac 155  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||| |||    
T  17028457 agtcactgtccttgaggattttatccgcctcattagcgcatatcctcccaggatatgacagttcttccccgttatgaatcataaccggaggtgacacaac 17028358  T
Q  156 ag 157  Q
    ||    
T  17028357 ag 17028356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 17558893 - 17558792
Alignment:
Q  56 agtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgacagaac 155  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||| |||    
T  17558893 agtcactgtccttgaggattttatccgcctcattagcgcatatcctcccaggatatgacagttcttccccgttatgaatcataaccggaggtgacacaac 17558794  T
Q  156 ag 157  Q
    ||    
T  17558793 ag 17558792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 52 - 156
Target Start/End: Complemental strand, 38678790 - 38678689
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgaca 151  Q
    ||||||||| |||| |||||||||| ||||| ||||||||||||||||||  ||||||||||||||  |||||||||||||||| ||| |||||||||||    
T  38678790 acatagtca-tgtctttgaggatttgatccgtctcataagcgcatatccttacaggatacaacagt--ttccccgttatgaatcataatcggaggtgaca 38678694  T
Q  152 gaaca 156  Q
    |||||    
T  38678693 gaaca 38678689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 38676373 - 38676310
Alignment:
Q  93 gcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgacagaaca 156  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  38676373 gcatatcctcccaggatacaacaattcttccccgttatgaatcataatcggaggtgacagaaca 38676310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 173
Target Start/End: Complemental strand, 21347198 - 21347097
Alignment:
Q  72 gattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgacagaacagtttaaattaatctc 171  Q
    ||||||||||||||||||||| |||||||||||| |||||||| |||||| | ||||||||||| |||  | ||||||| |||||  | ||| |||||||    
T  21347198 gattttatccgcctcataagcacatatcctcccaagatacaactgttctttcacgttatgaatcataaatgaaggtgacggaacaactgaaaataatctc 21347099  T
Q  172 aa 173  Q
    ||    
T  21347098 aa 21347097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 31183807 - 31183750
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggat 109  Q
    ||||| |||||||  ||||| ||||||||| |||||| |||||||||||||| |||||    
T  31183807 acataatcactgttattgagtattttatccacctcattagcgcatatcctccaaggat 31183750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 6667730 - 6667835
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgaca 151  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6667730 acatagtcactgttcttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcataaccggaggtgaca 6667829  T
Q  152 gaacag 157  Q
    ||||||    
T  6667830 gaacag 6667835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 6671402 - 6671501
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgaca 151  Q
    |||||||||| ||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6671402 acatagtcaccgtccttgaggattttatccgcctc------gcatatcctcccaggatacaacagttcttccccgttatgaatcataaccggaggtgaca 6671495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 13010544 - 13010647
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgaca 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||| ||||| ||| |||| ||||||    
T  13010544 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcctaggatataacagttcttctccgttacgaatcataa-cggatgtgaca 13010642  T
Q  152 gaaca 156  Q
    |||||    
T  13010643 gaaca 13010647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 895549 - 895477
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccc 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  895549 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaaagttcttccc 895477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 52 - 156
Target Start/End: Complemental strand, 44643558 - 44643455
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgaca 151  Q
    ||||||||||||||||| || ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| ||| |||||    
T  44643558 acatagtcactgtccttcag-attctatccgcctcataagcgcatatcctcctaggatacaacagttcttccccgatatgaatcataaccagagatgaca 44643460  T
Q  152 gaaca 156  Q
    |||||    
T  44643459 gaaca 44643455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 20058114 - 20058177
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca 115  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |||||||||    
T  20058114 acatagtcactgtccttgaggattttatccgcctcattagcgcgtatccttccacgatacaaca 20058177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 31767465 - 31767542
Alignment:
Q  58 tcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccccgttatgaatc 135  Q
    ||||| ||||| ||||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||| | ||||||||    
T  31767465 tcactatccttaaggattt-atccgcctcataagcacatatcctcctaggatacaacatgttcttccctgatatgaatc 31767542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 43287951 - 43287892
Alignment:
Q  56 agtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca 115  Q
    ||||||||||||| | |  ||||| ||||||||||||||||||| | |||||||||||||    
T  43287951 agtcactgtccttaaaggatttattcgcctcataagcgcatatctttccaggatacaaca 43287892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 52 - 156
Target Start/End: Complemental strand, 2590607 - 2590503
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgaca 151  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2590607 acatagtcactgtccttgaggattttattcgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcataaccggaggtgaca 2590508  T
Q  152 gaaca 156  Q
    |||||    
T  2590507 gaaca 2590503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 52 - 173
Target Start/End: Complemental strand, 21189508 - 21189387
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgaca 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||||||    
T  21189508 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctccccggatacaacagttattccccgttatgaatcataactggaggtgaca 21189409  T
Q  152 gaacagtttaaattaatctcaa 173  Q
    |||||  | ||| |||||||||    
T  21189408 gaacaactcaaaataatctcaa 21189387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 18739122 - 18739227
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgaca 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||| ||| |||||||||||    
T  18739122 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccacaatacaacggttcttccccgttatgaatcataatcggaggtgaca 18739221  T
Q  152 gaacag 157  Q
    ||||||    
T  18739222 gaacag 18739227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 59 - 173
Target Start/End: Complemental strand, 1043244 - 1043131
Alignment:
Q  59 cactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgacagaacagt 158  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||| ||||||||||||| ||| ||| |||||||||||||     
T  1043244 cactgtccttgaggattttatccgtctcataggcgcatatcctcccaggatacaaccgttctt-cccgttatgaatcataatcgggggtgacagaacagg 1043146  T
Q  159 ttaaattaatctcaa 173  Q
    | ||||| |||||||    
T  1043145 tcaaattcatctcaa 1043131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 14433610 - 14433713
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccccgttatgaatcttaaccggaggtgac 150  Q
    |||||||||||||||||| |||||||||||||||||||||  || ||| ||||| ||||||||| |||||||||||||||||||| |||||  |||||||    
T  14433610 acatagtcactgtccttgtggattttatccgcctcataagtacacatcttcccaagatacaacatgttcttccccgttatgaatcataaccaaaggtgac 14433709  T
Q  151 agaa 154  Q
    ||||    
T  14433710 agaa 14433713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 35969288 - 35969405
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgaca 151  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||   || || | || |||||||||||||||||||||||| |||| |||||| |||    
T  35969288 acatagtcactgtccttgaagattttatccgcctcaaaagcgcata---tcacatgtta-aacagttcttccccgttatgaatcataacaggaggtaaca 35969383  T
Q  152 gaacagtttaaattaatctcaa 173  Q
    |||||  | ||||| |||||||    
T  35969384 gaacaactcaaatttatctcaa 35969405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 27083123 - 27083173
Alignment:
Q  75 tttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccc 124  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  27083123 tttatccgcctcacaagcgcatatcctcccaggatacaacaggttcttccc 27083173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 10941440 - 10941489
Alignment:
Q  56 agtcactgtccttgaggattttatccgcctcataagcgcatatcctcccag 106  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  10941440 agtcactgtccttaaggattt-attcgcctcataagcgcatatcctcccag 10941489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 10947309 - 10947358
Alignment:
Q  56 agtcactgtccttgaggattttatccgcctcataagcgcatatcctcccag 106  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  10947309 agtcactgtccttaaggattt-attcgcctcataagcgcatatcctcccag 10947358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 19697856 - 19697977
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgaca 151  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  19697856 acatagtcattgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcataatcggaggtgaca 19697955  T
Q  152 gaacagtttaaattaatctcaa 173  Q
    |||||  | ||||| |||||||    
T  19697956 gaacaactcaaatttatctcaa 19697977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 130
Target Start/End: Original strand, 6591863 - 6591938
Alignment:
Q  55 tagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttat 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  6591863 tagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatgcaacagttcttctccgttat 6591938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 24044948 - 24045016
Alignment:
Q  56 agtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccc 124  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| |||||||||    
T  24044948 agtcactgtccttaaggattt-attcgcctcataagcgcatatcctcccaggatacaacatgttcttccc 24045016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 15518123 - 15518074
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcct 101  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  15518123 acatagtcactttccttgaggattatatccgcctcataagcgcatatcct 15518074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 14579716 - 14579662
Alignment:
Q  61 ctgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacag 116  Q
    |||||||| ||||||| |||||||||||||||| |||||||| |||||||||||||    
T  14579716 ctgtccttaaggattt-atccgcctcataagcgaatatcctctcaggatacaacag 14579662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 24041663 - 24041713
Alignment:
Q  75 tttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccc 124  Q
    ||||| ||||||||||||||||||||||| ||||||||||| |||||||||    
T  24041663 tttattcgcctcataagcgcatatcctcctaggatacaacatgttcttccc 24041713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 2936163 - 2936205
Alignment:
Q  56 agtcactgtccttgaggattttatccgcctcataagcgcatatc 99  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  2936163 agtcactgtccttaaggattt-atccgcctcataagcgcatatc 2936205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 3835677 - 3835733
Alignment:
Q  58 tcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca 115  Q
    |||| |||||| ||||||| || | |||||||||||||||||||| ||||||||||||    
T  3835677 tcaccgtccttaaggattt-attcacctcataagcgcatatcctctcaggatacaaca 3835733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 31210043 - 31210190
Alignment:
Q  1 ataacctgccaagacagtataccattacataaacttgaggcgtaacatgtaacatagtcactgtccttgaggattttatccgcctcataagcgcatatcc 100  Q
    |||||||||||||| |||| |||||||||||||| |||||||| ||||       |||||||||||||||||||||||||||||||||||| ||||||||    
T  31210043 ataacctgccaaga-agtaaaccattacataaacctgaggcgtgacat-------agtcactgtccttgaggattttatccgcctcataagtgcatatcc 31210134  T
Q  101 tcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgacagaaca 156  Q
    |||| || ||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  31210135 tcccggggtacaacagttcttccccgttatgaatcataatcggaggtgacagaaca 31210190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 52 - 173
Target Start/End: Complemental strand, 11674107 - 11673987
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgaca 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| |||||||||||    
T  11674107 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttgtt-cccgttatgaatcataatcggaggtgaca 11674009  T
Q  152 gaacagtttaaattaatctcaa 173  Q
    |||||  | ||||| |||||||    
T  11674008 gaacaactcaaatttatctcaa 11673987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 31206637 - 31206741
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgaca 151  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||| |||| ||||||||||    
T  31206637 acatagtcactgtctttgaggattttatccacctcataagcgcatatcctggcaggatacaacagttcttccccgttatgaatcataactggaggtgaca 31206736  T
Q  152 gaaca 156  Q
    |||||    
T  31206737 gaaca 31206741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 39426464 - 39426566
Alignment:
Q  54 atagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgacaga 153  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||| ||||||||||||| |||||||||| |||||||||||||||||    
T  39426464 atagtcactgtccttgaggattttatccgtctcataagcgaatatcctcccaagataaaacagttcttccctgttatgaatcataaccggaggtgacaga 39426563  T
Q  154 aca 156  Q
    |||    
T  39426564 aca 39426566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 3850550 - 3850672
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaac-agttcttccccgttatgaatcttaaccggaggtgac 150  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||| ||||||||| || |||||||| || || |||||||     
T  3850550 acatagtcactgtccttgatgattttatacgcctcataagcgcatatcctcctatgatacaacgagttcttcctcggtatgaatcatacccagaggtgat 3850649  T
Q  151 agaacagtttaaattaatctcaa 173  Q
    ||||||  | ||||| |||||||    
T  3850650 agaacaactcaaatttatctcaa 3850672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 22301162 - 22301224
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaac 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22301162 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaagatacaac 22301224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 13815840 - 13815772
Alignment:
Q  56 agtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccc 124  Q
    ||||||||||||| ||||||| || ||||||||||||||||||| ||||||||||||||| |||||||||    
T  13815840 agtcactgtccttaaggattt-attcgcctcataagcgcatatcttcccaggatacaacatgttcttccc 13815772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 15569668 - 15569569
Alignment:
Q  56 agtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccccgttatgaatcttaaccggaggtgacagaa 154  Q
    |||||||||||||  |||||| ||||||||||||||| |||||||||||||||||||||| ||||||| | | |||||||| | | | ||||||||||||    
T  15569668 agtcactgtccttagggattt-atccgcctcataagcacatatcctcccaggatacaacaggttcttctctgatatgaatcat-atcagaggtgacagaa 15569571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 32352444 - 32352502
Alignment:
Q  56 agtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca 115  Q
    ||||||||||||| ||||||| || |||||||||||||||||||||||||||| ||||||    
T  32352444 agtcactgtccttaaggattt-attcgcctcataagcgcatatcctcccaggacacaaca 32352502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 5434872 - 5434994
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccccgttatgaatcttaaccggaggtgac 150  Q
    ||||||||  |||| |||| |||||| ||| |||||||||||||||| ||  |||||||||| | |||||||||||||| ||||| |||   ||| ||||    
T  5434872 acatagtcgttgtctttgatgattttttccacctcataagcgcatattctgtcaggatacaagaggttcttccccgttaagaatcataaatagagatgac 5434971  T
Q  151 agaacagtttaaattaatctcaa 173  Q
    ||||||  | ||||| |||||||    
T  5434972 agaacaactaaaatttatctcaa 5434994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 2609635 - 2609696
Alignment:
Q  75 tttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccccgttatgaatc 135  Q
    |||||| | ||||||||||||||||||| |||||||||||| ||||||| | | ||||||||    
T  2609635 tttatctgtctcataagcgcatatcctcgcaggatacaacatgttcttctctgatatgaatc 2609696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 15170019 - 15169978
Alignment:
Q  75 tttatccgcctcataagcgcatatcctcccaggatacaacag 116  Q
    |||||| ||||||||| ||||||||||| |||||||||||||    
T  15170019 tttatcagcctcataaacgcatatcctcacaggatacaacag 15169978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 52 - 173
Target Start/End: Complemental strand, 82728 - 82607
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgaca 151  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| ||||||    
T  82728 acatagtcactatccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttataaatcatagccggatgtgaca 82629  T
Q  152 gaacagtttaaattaatctcaa 173  Q
    |||||  | ||||| |||||||    
T  82628 gaacatctcaaatttatctcaa 82607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 12141663 - 12141767
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgaca 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||  |||||||||    
T  12141663 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacaattattccccgttatgaatcataactagaggtgaca 12141762  T
Q  152 gaaca 156  Q
    |||||    
T  12141763 gaaca 12141767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 24981173 - 24981294
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgaca 151  Q
    |||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |    
T  24981173 acatagtcagcgtccttgaggattttatccgcctcataagcacatatcctcccaggatacaacagttcttccccgttatgaatcataaccggagatgata 24981272  T
Q  152 gaacagtttaaattaatctcaa 173  Q
    |||||  | ||||| |||||||    
T  24981273 gaacaactcaaatttatctcaa 24981294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 1953780 - 1953690
Alignment:
Q  66 cttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgacagaaca 156  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  1953780 cttgaggattttatctgcctcataagcgaatatcctcccaggatacaacagttcttccctgttatgaatcataacgggaggtgacagaaca 1953690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 62 - 156
Target Start/End: Original strand, 4242590 - 4242684
Alignment:
Q  62 tgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgacagaaca 156  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| || |||||||||||||    
T  4242590 tgtccttgaggattttatccgactcatgagcgcatatcctcccaggatacaactgttcttccccgttatgaatcataatcgaaggtgacagaaca 4242684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 9111552 - 9111622
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttc 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9111552 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcttcccaggatacaacagttcttc 9111622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 47580503 - 47580399
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctc--ccaggatacaacagttcttccccgttatgaatcttaaccggaggtga 149  Q
    ||||||||| ||||||||| ||||||||| |||||||||||| ||||||||  |||||||||||||| |||||||||||||||||| |||||  || |||    
T  47580503 acatagtcaatgtccttgaagattttatctgcctcataagcgaatatcctccaccaggatacaacaggtcttccccgttatgaatcataaccaaagatga 47580404  T
Q  150 cagaa 154  Q
    |||||    
T  47580403 cagaa 47580399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 38825492 - 38825572
Alignment:
Q  56 agtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaac-agttcttccccgttatgaatc 135  Q
    ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||| |||||||| | | ||||||||    
T  38825492 agtcactgtccttaaggattttatcctcctcataaacgcatatcctcccaggatacaacaagttcttctctgctatgaatc 38825572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 43254217 - 43254149
Alignment:
Q  56 agtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccc 124  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| |||||||||    
T  43254217 agtcactgtccttaaggattt-attcgcctcataagcgcatatcctcccaggatacaacatgttcttccc 43254149  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 38828702 - 38828771
Alignment:
Q  56 agtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaac-agttcttccc 124  Q
    ||||||| ||||| |||||||||||||||| |||||| |||||| |||||||||| ||| ||||||||||    
T  38828702 agtcactatccttaaggattttatccgccttataagctcatatcttcccaggataaaacaagttcttccc 38828771  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 49387621 - 49387689
Alignment:
Q  56 agtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccc 124  Q
    |||||||| |||| ||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||    
T  49387621 agtcactggccttaaggattt-attcgccttataagcgcatatcctcccaggatacaacatgttcttccc 49387689  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 51465562 - 51465497
Alignment:
Q  91 gcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgacagaaca 156  Q
    |||||||| || ||||||||||||||||||| ||||||||||||| ||  ||||||| ||||||||    
T  51465562 gcgcatattcttccaggatacaacagttctttcccgttatgaatcatactcggaggttacagaaca 51465497  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 39197297 - 39197257
Alignment:
Q  75 tttatccgcctcataagcgcatatcctcccaggatacaaca 115  Q
    |||||| |||||||||||||||||||| |||||||||||||    
T  39197297 tttatctgcctcataagcgcatatcctaccaggatacaaca 39197257  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 49390928 - 49390968
Alignment:
Q  75 tttatccgcctcataagcgcatatcctcccaggatacaaca 115  Q
    ||||| ||| ||||||||||||||||| |||||||||||||    
T  49390928 tttattcgcttcataagcgcatatccttccaggatacaaca 49390968  T

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Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 52 - 156
Target Start/End: Complemental strand, 18594921 - 18594817
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcttaaccggaggtgaca 151  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| | ||||||||    
T  18594921 acattgtcactgtccttgaagattttatccgcctcataagcgcatattctcacaggatacaacagttcttccccgttatgaatcataactgaaggtgaca 18594822  T
Q  152 gaaca 156  Q
    |||||    
T  18594821 gaaca 18594817  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 172
Target Start/End: Original strand, 26703031 - 26703149
Alignment:
Q  55 tagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaac-agttcttccccgttatgaatcttaaccggaggtgacaga 153  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| | | ||||||||  ||||||||||||||||    
T  26703031 tagtcactgtccttgaggattttatccgcctcataaacgcatatcctcccaagatacaacaagttcttctctggtatgaatcaaaaccggaggtgacaga 26703130  T
Q  154 acagtttaaattaatctca 172  Q
    |||||| ||||| ||||||    
T  26703131 acagttcaaatttatctca 26703149  T

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Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 172
Target Start/End: Original strand, 26972764 - 26972882
Alignment:
Q  55 tagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaac-agttcttccccgttatgaatcttaaccggaggtgacaga 153  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| | | ||||||||  ||||||||||||||||    
T  26972764 tagtcactgtccttgaggattttatccgcctcataaacgcatatcctcccaagatacaacaagttcttctctggtatgaatcaaaaccggaggtgacaga 26972863  T
Q  154 acagtttaaattaatctca 172  Q
    |||||| ||||| ||||||    
T  26972864 acagttcaaatttatctca 26972882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 39292203 - 39292122
Alignment:
Q  54 atagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatc 135  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||    
T  39292203 atagtcactgtccttaaggattttatccgcctcataagcgcatatccttccagaatacaacagttcttctccgttatgaatc 39292122  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 13292037 - 13291996
Alignment:
Q  75 tttatccgcctcataagcgcatatcctcccaggatacaacag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13292037 tttatccgcctcataagcgcatatcctcccaggatacaacag 13291996  T

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Target: scaffold0028 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 110227 - 110144
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatc 135  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| | | ||||||||    
T  110227 acatagtcactgtccttgaggattttatccgcctcataaacgcatatcctcccaagatacaacagttcttcgctgatatgaatc 110144  T

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Target: scaffold0028; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 127806 - 127723
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatc 135  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| | ||||||||    
T  127806 acatagtcactgtccttgaggattttatccgcctcagaaacgcatatcctcccatgatacaacagttcttccctgatatgaatc 127723  T

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Target: scaffold0076 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 6771 - 6854
Alignment:
Q  52 acatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatc 135  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||| | ||||||||    
T  6771 acatagtcactgtcattgaggattttatccgcctcataagtgcatatccttccatgatacaacagtttttccctgatatgaatc 6854  T

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Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 11634190 - 11634270
Alignment:
Q  61 ctgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccccgttatgaatcttaac 140  Q
    |||| |||||||||||||||| |||| ||| |||||||||||||||||||||||| || ||||||||||||||||| ||||    
T  11634190 ctgttcttgaggattttatccacctcgtaaacgcatatcctcccaggatacaacatgtccttccccgttatgaatcataac 11634270  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 9372227 - 9372286
Alignment:
Q  56 agtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacag 116  Q
    ||||||||||||| ||||||| || ||||||||||||||||||| ||||||||||||||||    
T  9372227 agtcactgtccttaaggattt-attcgcctcataagcgcatatcgtcccaggatacaacag 9372286  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 42253577 - 42253635
Alignment:
Q  56 agtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca 115  Q
    ||||||||||||| ||||||| | |||||||||||||||||||||||| |||||||||||    
T  42253577 agtcactgtccttaaggattt-acccgcctcataagcgcatatcctccaaggatacaaca 42253635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 19930051 - 19930118
Alignment:
Q  56 agtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccc 124  Q
    |||||| |||||| ||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||    
T  19930051 agtcaccgtccttaaggattt-atccgcctcataagcgcatatcctccca-gatacaacatgttcttccc 19930118  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 2353298 - 2353239
Alignment:
Q  56 agtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacag 116  Q
    ||||| ||||||| ||||||| |||||||||||||| || |||||||||||||||||||||    
T  2353298 agtcattgtccttaaggattt-atccgcctcataagtgcttatcctcccaggatacaacag 2353239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 26445109 - 26445188
Alignment:
Q  56 agtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca-gttcttccccgttatgaatc 135  Q
    ||||||||||||| ||||||| ||||||||||||| || |||||||  || ||||||||| ||||||||| | ||||||||    
T  26445109 agtcactgtccttaaggattt-atccgcctcataatcgtatatcctgtcaagatacaacatgttcttccctgatatgaatc 26445188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 14658230 - 14658173
Alignment:
Q  57 gtcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaaca 115  Q
    |||| ||||||| ||||||| ||| || ||||||||||||||||| |||||||||||||    
T  14658230 gtcattgtccttaaggattt-atctgcatcataagcgcatatccttccaggatacaaca 14658173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 19935250 - 19935297
Alignment:
Q  56 agtcactgtccttgaggattttatccgcctcataagcgcatatcctccc 104  Q
    ||||||||||||| ||||||| |||| |||||||||||||||| |||||    
T  19935250 agtcactgtccttaaggattt-atcctcctcataagcgcatattctccc 19935297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 4942 - 4999
Alignment:
Q  58 tcactgtccttgaggattttatccgcctcataagcgcatatcctcccaggatacaacag 116  Q
    ||||||| ||| ||||||| ||| ||||||||||| |||||||||||| ||||||||||    
T  4942 tcactgttcttaaggattt-atctgcctcataagcacatatcctcccaagatacaacag 4999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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