View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20279_low_1 (Length: 592)
Name: NF20279_low_1
Description: NF20279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20279_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 103 - 504
Target Start/End: Original strand, 41984488 - 41984888
Alignment:
| Q |
103 |
ttgaaggtgacaaggaaagatagtgttagataattgggttgattcagaaaatatgaagcagaataccatagaatttattttactacaataggatattcct |
202 |
Q |
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| T |
41984488 |
ttgaaggtgacaaggaaagatagtgctagataattgggttgattcagaaaatatgaagcagaataccatagaatttattttactacaataggatattcct |
41984587 |
T |
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| Q |
203 |
gtagttgtaaactattaaactgcttaaattactttttatacaagatggctttatcagttatcacccttgatcaattgagagaaggaagaaaaagagttgt |
302 |
Q |
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| T |
41984588 |
gtagttgtaaactattaaactgcttaaattactttt-atacaagatggccttatcagctatcacccttgatcaattgagagaaggaagaaaaagagttgt |
41984686 |
T |
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| Q |
303 |
ccaggttctcattcctaactatacatataatcacatatttcctataatttgcaataaaacataaataacgtatatatttttgctgtgtttttgtatttca |
402 |
Q |
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| T |
41984687 |
ccaggttctcattcctaactaaacatataatcacatatttcctataatttgcaataaaacataaataacgtatatatttttgctgtgtttttgtatttca |
41984786 |
T |
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| Q |
403 |
ctatcgattggacaatcataatcaacacggcatttcaataaaccaaaggttcaaaccaattatgtgcggtatattctcatggaaccatgtctttattaga |
502 |
Q |
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| T |
41984787 |
ctatcgattggacaatcataatcaacacggcatttcaataaaccaaaggttcaaaccaattatgtgtggtatattatcatggaaccatgtctttattaga |
41984886 |
T |
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| Q |
503 |
ta |
504 |
Q |
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| T |
41984887 |
ta |
41984888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 66 - 382
Target Start/End: Original strand, 41986658 - 41986995
Alignment:
| Q |
66 |
gatgctggccagatactggtttaacaattttctgctcttgaaggtgacaaggaaagatagtgt------------------tagataattgggttgattc |
147 |
Q |
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| T |
41986658 |
gatgatggccagatactggtttaacaattttatgctctttaaggtgacaaggaaagatactgtcacacaattggatactgttagataattgggttcattc |
41986757 |
T |
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| Q |
148 |
agaaaatatgaagcagaataccatag--aatttattttactacaataggatattcctgtagttgtaa----------actattaaactgcttaaattact |
235 |
Q |
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| T |
41986758 |
agaaaatatgaagcagagaacaatatctaaattatttgatcacaataggctattcatgtagttgtaattggctttaaaccattaaactcattaagttact |
41986857 |
T |
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| Q |
236 |
ttttatacaagatggctttatcagttatcacccttgatcaattgagagaaggaagaaaaagagttgtccaggttctcattcctaactatacatataatca |
335 |
Q |
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| T |
41986858 |
tgttatagaagatgaccttatca-------cccttgatcaattgaaagaaggaataaaa-gagttttc-aggttctcattcctaaccatacatataatca |
41986948 |
T |
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| Q |
336 |
catatttcctataatttgcaataaaacataaataacgtatatatttt |
382 |
Q |
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| T |
41986949 |
cacatttcctataatttccaatagaacaataataacatatatgtttt |
41986995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 517 - 579
Target Start/End: Original strand, 41984958 - 41985020
Alignment:
| Q |
517 |
ctgcatatgttgtgtcaattgcaagttgtaactgtactttcctcactcatatggcacaggttc |
579 |
Q |
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| T |
41984958 |
ctgcatatgttgtgtcaattgcaagttgtaactgtactttcctcactcatatgccacaggttc |
41985020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 41984434 - 41984479
Alignment:
| Q |
18 |
aattatatgaatcctagaccccacattatgtctgtatttagttatg |
63 |
Q |
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| T |
41984434 |
aattatatgaatcctagaccccacattatgtctgtatttagttatg |
41984479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 571
Target Start/End: Original strand, 41987517 - 41987571
Alignment:
| Q |
517 |
ctgcatatgttgtgtcaattgcaagttgtaactgtactttcctcactcatatggc |
571 |
Q |
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| T |
41987517 |
ctgcataagctgtgtcaattgcaagttgcaactgcactttcctcagtcctatggc |
41987571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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