View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20279_low_2 (Length: 592)
Name: NF20279_low_2
Description: NF20279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20279_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Complemental strand, 14066993 - 14066422
Alignment:
| Q |
1 |
tcttttcgaaccagcaagttgacccttttctccatccattatcataaattataaaatgctttattggtgaaataatgaaggttaaacttgacttagaggt |
100 |
Q |
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| T |
14066993 |
tcttttcgaaccaacaagttgacccttttctccatccattatcataaattataaaatgctttattggtgaaataatgaaggttaaacttgacttagaggt |
14066894 |
T |
|
| Q |
101 |
tgatgttaaattgcaattgattttattgaacgttgaagnnnnnnnnnnnnnnnnnnntttagggaatagcacttcagaagataagcaagatcaaattcct |
200 |
Q |
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| T |
14066893 |
tgatgttaaattgcaattgatttgattgaacattgaagtgatgatgatgataat---tttagggagcagcacttcagaagataagcaagatcaaattcct |
14066797 |
T |
|
| Q |
201 |
gattctgatatcaggtgccaagtttggtggcatgaactacggaacacctaaactagcttccaatgcattttcaaaaccaattgattgtccctctcttcac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14066796 |
gattctgatatcaggtgccaagtttggtggcatgaactacggaacacctaaactagcttccaatgcattttcaaaaccaattgattgtccctctcttcac |
14066697 |
T |
|
| Q |
301 |
attataattagtttcaataaacaatctcttctaattattttttcaatcaaattttcctttacattttgccttgaaaagtcacattggtatcttatattgt |
400 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14066696 |
attataggtagtttcaataaacagtctcttctaattattttttaaatcaaattttcctttacattttgccttgaaaagtcacattggtatcttatattgt |
14066597 |
T |
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| Q |
401 |
ttatttagtgcagcattgtacttactaatatacttcattcatataatgtgattaaggggacatggatttcttgaagccggaaagcattattttgcgagag |
500 |
Q |
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| T |
14066596 |
ttatttagtgcagcattgtacttactaatatacttcattcatataatgtgattaaggggacatggatttcttgaagccggaaagcattattttgcgagag |
14066497 |
T |
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| Q |
501 |
gcttttgtcgaccctgttgtgattcatcatccaaaaggacatacaatcccaagacttggttagtcatactcatat |
575 |
Q |
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| T |
14066496 |
ggttttgtcgaccctgttgtgattcatcatccaaaaggacatacaatcccaagacttggttagtcatactcatat |
14066422 |
T |
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