View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20279_low_3 (Length: 453)
Name: NF20279_low_3
Description: NF20279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20279_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 20 - 441
Target Start/End: Original strand, 6191596 - 6192017
Alignment:
| Q |
20 |
acagtcatactggttagttggactaattagttagactagttagttgttctcattttctatatacttatctttactttactctcatctatgatttctatca |
119 |
Q |
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| T |
6191596 |
acagtcatactggttagttggactaattagttagactagttagttgttctcattttctatatacttatctttactttactctcatctatgatttctatca |
6191695 |
T |
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| Q |
120 |
agaatagtaacatgtacttttatttgttaggattcgtcatgatagcttgtctatatttgtgttctagttttgttataatgttcataagagataggagacc |
219 |
Q |
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| T |
6191696 |
agaatagtaacatgtacttttatttgttaggattcatcatgatagcttgtctatatttgtgttctagttttgttataatgttcataagagataggagacc |
6191795 |
T |
|
| Q |
220 |
agattccttttttatttgtgtaaagtaaggccgtctttgaggaatttgcaaacagtacccacaagctaatttttactccacttgcaaatttaccactgtg |
319 |
Q |
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| T |
6191796 |
agattccttttttatttgtgtaaagtaaggccgtctttgaagaatttgcaaacagtacccacaagctaatttttactccacttgcaaatttacgactgtg |
6191895 |
T |
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| Q |
320 |
gctaattttcatgcgatgtttggtaaattacccacatttcttaaaggaaacttagaaaaaacctttgtctaatgataggaggtaactcttcaactttctt |
419 |
Q |
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| T |
6191896 |
gctaattttcatgcgatgtttggtaaattacccacaattcttaaaggaaacttagaaaaaacctttgtctaatgataggaggtaactcttcaactttctt |
6191995 |
T |
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| Q |
420 |
tttgagaaatgccttgtatatt |
441 |
Q |
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| T |
6191996 |
tttgagaaatgccttgtatatt |
6192017 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 31458474 - 31458422
Alignment:
| Q |
278 |
ccacaagctaatttttactccacttgcaaatttaccactgtggctaattttca |
330 |
Q |
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| T |
31458474 |
ccacaagctagtttttactctacttgcatatttactaatgtggctaattttca |
31458422 |
T |
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