View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20279_low_4 (Length: 384)
Name: NF20279_low_4
Description: NF20279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20279_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 32689046 - 32688671
Alignment:
| Q |
1 |
acaggctccacgaagaataatctcaagtaacataactacggaaaatccttgtggttaactcatacagaaaatgcttgttttaataggtaagtaggtgggg |
100 |
Q |
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| T |
32689046 |
acaggctccacgaagaataatctcaagtaacataactacggaaaatccttgtggttaactcatacagaaaatgcttgttttaataggtaagtaggtgggg |
32688947 |
T |
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| Q |
101 |
tttaaatagagagaattttatattcttcagttagtgatgtgggaattcatgattttaaacttttcacatataactaaatatccaacggaaaccagaacta |
200 |
Q |
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| T |
32688946 |
tttaaatagagagaattttatattcttcagttagtgatgtgggaattcatgattttaaacttttcacatataactaaatatccaacggaaaccagaacta |
32688847 |
T |
|
| Q |
201 |
acgttctcctcagttccaagttcatattttcttgattttcagttttcacttttaagcaaatgaaacctaatgttgttatgtcagtgtgtttggttctccc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
32688846 |
acgttctcctcagttccaagttcatattttcttgattttcagttttcacttttaagcaaatgaaacctcatgtcgttatgtcagtgtgtttggttctccc |
32688747 |
T |
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| Q |
301 |
atgagcaattggacgcttagccaatttaattgttgagacagtaagttaacagttgcaatacctttactttcatctc |
376 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32688746 |
atgagcaattggacgcttagccaatttaattgttgagacagcaagttaacagttgcaatacctttactttcatctc |
32688671 |
T |
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