View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20279_low_6 (Length: 280)
Name: NF20279_low_6
Description: NF20279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20279_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 267
Target Start/End: Original strand, 2077073 - 2077181
Alignment:
| Q |
159 |
ttccacctagccttcatatctctttcctaaaccaaaataactccctcttcaactttaatagacttcacttgatccaaatcttttgtctttatttattgtc |
258 |
Q |
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| T |
2077073 |
ttccatctacccttaatatctctttcctgaaccaaaattttaccctcttcatccttaatacactttacttggtccaaatctcttgtctttctttctcgtc |
2077172 |
T |
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| Q |
259 |
ctttagcaa |
267 |
Q |
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| T |
2077173 |
ccttagcaa |
2077181 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 8188867 - 8188902
Alignment:
| Q |
1 |
tattgtagcttgccaattgattttgaattaacttac |
36 |
Q |
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| T |
8188867 |
tattgtagcttgccaattgattttgaattaacttac |
8188902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 267
Target Start/End: Original strand, 48624125 - 48624236
Alignment:
| Q |
156 |
tttttccacctagccttcatatctctttcctaaaccaaaataactccctcttcaactttaatagacttcacttgatccaaatcttttgtctttatttatt |
255 |
Q |
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| T |
48624125 |
tttttccatctacccttaatatctctttcctgaaccaaaactctaccctcttcatccttaatacactttacttggtccaaatctcttgtctttctttctc |
48624224 |
T |
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| Q |
256 |
gtcctttagcaa |
267 |
Q |
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| T |
48624225 |
gtcccttagcaa |
48624236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 51449347 - 51449413
Alignment:
| Q |
201 |
ccctcttcaactttaatagacttcacttgatccaaatcttttgtctttatttattgtcctttagcaa |
267 |
Q |
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| T |
51449347 |
ccctcttcatccttaatacactttacttggtccaaatcttttgtctttctttttcgtcccttagcaa |
51449413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 12903799 - 12903763
Alignment:
| Q |
212 |
tttaatagacttcacttgatccaaatcttttgtcttt |
248 |
Q |
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| T |
12903799 |
tttaatacacttcacttgatccaagtcttttgtcttt |
12903763 |
T |
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