View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2027_high_1 (Length: 621)
Name: NF2027_high_1
Description: NF2027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2027_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 20 - 611
Target Start/End: Original strand, 31945438 - 31946034
Alignment:
| Q |
20 |
ccagtgatgcatgagaattttccggaggggtcggttgagcatagtgttcggccccatatgcggccggaccaagatgtgggcatggtgacggcattggatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31945438 |
ccagtgatgcatgagaattttccggaggggtcggttgagcatagtgttcggccccatatgcggccggaccaagatgtgggcatggtgacggcattggatt |
31945537 |
T |
|
| Q |
120 |
cgcccggttgtagggcgaagcctgtcgttgctagctgtgccgttccagcaccagacaaaattcccggccaaacaggatagctgcacttgtttacaattgt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31945538 |
cgcccggttgtagggcgaagcctgtcgttgctagttgtgccgttccggcaccagacaaaattcccggccaaacaggatagctgcacttgtttacaattgt |
31945637 |
T |
|
| Q |
220 |
aagtgtggctgaatttaaacctgaacaaacaaaccaattatcattaaattcttagagtatataaaactacattattttaaaaataattggcagctagaat |
319 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31945638 |
aaatgtggctgaatttaaacctgcacaaacaaaccaattatcattaaattcttagagtatataaaactacattattttaaaaataattggcagctagaat |
31945737 |
T |
|
| Q |
320 |
atgttgatatttg-nnnnnnnaaagaatctagctgcgaaaatcacatatcaaatgatgagaaaagaagaattactcattggttcgaactaggactcaaca |
418 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31945738 |
atgttgatatttgttttttttaaagaatctagctgcgaaaatcacatatcaaatgatgagaaaagaagaattactcattggttcgaactaggactcaaca |
31945837 |
T |
|
| Q |
419 |
tatcaaatgcttggtgcctc----ttaatatttaccatgaacattatctatttttaaattttagtgtatgcatgtataaaaaatgtatgcgtttatnnnn |
514 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31945838 |
tatcaaatgcttggtgcctcttaattaatatttaccatgaacattatctatttttaaattttagtgtatgcatgtataaaaaatgtatgcgtttataaaa |
31945937 |
T |
|
| Q |
515 |
nnntatatatctacaattttattttgtatgttacatgtannnnnnnncataacatgagggtaattagggactttggtctctcaataaatgtcctatg |
611 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31945938 |
aaatatatatctacaattttaaattgtgtgtaacatggattttttttcataacatgagggtaattagggactttggtctctcaataaatgtcctatg |
31946034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 8797905 - 8797833
Alignment:
| Q |
23 |
gtgatgcatgagaattttccggaggggtcggttgagcatagtgttcggccccatatgcggccggaccaagatg |
95 |
Q |
| |
|
|||||||||||||||||||| | |||||| ||||| |||||||| ||||||| ||||||||||| |||| |
|
|
| T |
8797905 |
gtgatgcatgagaattttccagtggggtcttgggagcagagtgttcgtccccatacacggccggaccatgatg |
8797833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University