View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2027_high_2 (Length: 527)
Name: NF2027_high_2
Description: NF2027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2027_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 10 - 514
Target Start/End: Original strand, 4201846 - 4202350
Alignment:
| Q |
10 |
aatataacaaatatggtacaaaatgtaactttaaatcaaatcaaagtcaaattatgtacctgataatcaatcttcatggctagctagcagaagcagggta |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4201846 |
aatataacaaatatggtacaaaatgtaactttaaatcaaatcaaagtcaaattatgtacctgataatcaatcttcatggctagctagcagaagcagggta |
4201945 |
T |
|
| Q |
110 |
agcattattgttgggaacaccaattgcagaagaacattcaccattttttccactacaattatttcccaattgaagttctgaaacacaaggcattggattt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4201946 |
agcattattgttgggaacaccaattgcagaagaacattcaccattttttccactacaattatttcccaattgaagttctgaaacacaaggcattggattt |
4202045 |
T |
|
| Q |
210 |
ttcccatcaacaccatgatcatagagaaaccctttgaaaacatggccactaatatgaactgtagccaagtaagcaaattcatcttcaccattgccaatag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4202046 |
ttcccatcaacaccatgatcatagagaaaccctttgaaaacatggccactaatatgaactgtggccaagtaagcaaattcatcttcaccattgccaatag |
4202145 |
T |
|
| Q |
310 |
cagttactctatgacatctgaatacagctggtgcattaacatgacctggtaaaccctctttgaaacctgcatctgcaattcaacagaattttcacttcaa |
409 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4202146 |
cagttactctatggcacctgaatacagctggtgcattaacatgacctggtaaaccctctttgaaacctgcatctgcaattcaacagaattttcacttcaa |
4202245 |
T |
|
| Q |
410 |
caacgttaatttcagttgtaataatttcatgtggtcctcaaagacacacaaattactctataaccacgcattcacatagtcatacgatattattaatttg |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4202246 |
caacgttaatttcagttgtaataatttcatgtggtcctcaaagacacacaaattactctataaccacgcattcacatagtcatacgatattattcatttg |
4202345 |
T |
|
| Q |
510 |
atttt |
514 |
Q |
| |
|
||||| |
|
|
| T |
4202346 |
atttt |
4202350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 156 - 322
Target Start/End: Complemental strand, 14513858 - 14513689
Alignment:
| Q |
156 |
tttccactacaattatttcccaattgaagttctgaaacacaaggcattgg---atttttcccatcaacaccatgatcatagagaaaccctttgaaaacat |
252 |
Q |
| |
|
|||||||| | |||| |||| | ||| | |||||||||||||||||||| |||||| ||||||| || |||||||||||||||||||| || |||| |
|
|
| T |
14513858 |
tttccacttccattacttccaagttgcaattctgaaacacaaggcattgtttcatttttgtcatcaactccttgatcatagagaaaccctttaaatacat |
14513759 |
T |
|
| Q |
253 |
ggccactaatatgaactgtagccaagtaagcaaattcatcttcaccattgccaatagcagttactctatg |
322 |
Q |
| |
|
|||||||||||| || || ||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
14513758 |
ggccactaatattcacagtggccaagtaagcaagttcatcttcaccattgccaatagcagaaactctatg |
14513689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 39018419 - 39018461
Alignment:
| Q |
216 |
tcaacaccatgatcatagagaaaccctttgaaaacatggccac |
258 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
39018419 |
tcaacaccatgatcataaagaaaacctttgaaaacatggccac |
39018461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University