View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2027_high_3 (Length: 393)
Name: NF2027_high_3
Description: NF2027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2027_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 3 - 380
Target Start/End: Original strand, 12344272 - 12344649
Alignment:
| Q |
3 |
caccaaagcttaagccaagaacttggttttcttagacctattagaggaattcctgtttatcaaaaccctcctcctttgtcattccctcaacttcataatc |
102 |
Q |
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| T |
12344272 |
caccaaagcttaagccaagaacttggttttcttagacctattagaggaattcctgtttatcaaaaccctcctcctttgtcattccctcaacttcataatc |
12344371 |
T |
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| Q |
103 |
ataatcataatctaaatcatcttcatattctagatggtactactactactacaccttcttcaatttctaacaccaacaacacaagttcaagcccttttca |
202 |
Q |
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| T |
12344372 |
ataatcataatctaaatcatcttcatattttagatggtactactactactacaccttcttctatttctaacaccaacaacacaagttcaagcccttttca |
12344471 |
T |
|
| Q |
203 |
atctcaagctttgatgaggtcaagattcttgtcaagattcccagcaaaaagaagcatgagagctccaaggatgcgttggactactacacttcatgctcga |
302 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12344472 |
atcacaagctttgatgaggtcaagattcttgtcaagattcccagcaaaaagaagcatgagagctccaaggatgcgttggactactacacttcatgctcga |
12344571 |
T |
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| Q |
303 |
tttgttcatgctgttgaactcttaggtggccatgaaagtatgcttcatcttcaatttccactttcttaagaatatatt |
380 |
Q |
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| T |
12344572 |
tttgttcatgctgttgaactcttaggtggccatgaaagtatgcttcatcttcaatttccactttcttaagaatatatt |
12344649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 27568805 - 27568724
Alignment:
| Q |
261 |
agagctccaaggatgcgttggactactacacttcatgctcgatttgttcatgctgttgaactcttaggtggccatgaaagta |
342 |
Q |
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| T |
27568805 |
agagctccgaggatgcgttggactaccactcttcataatcgctttgttcatgctgttgaacttttaggtggccatgaaagta |
27568724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 342
Target Start/End: Original strand, 29258748 - 29258843
Alignment:
| Q |
247 |
caaaaagaagcatgagagctccaaggatgcgttggactactacacttcatgctcgatttgttcatgctgttgaactcttaggtggccatgaaagta |
342 |
Q |
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||||||||||||||||||| ||||| ||||| ||||| | ||| ||||||||| ||||||||||||||||||| || | |||||||||||||||| |
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| T |
29258748 |
caaaaagaagcatgagagcaccaagaatgcgatggacaagtactcttcatgctagatttgttcatgctgttgagcttcttggtggccatgaaagta |
29258843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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