View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2027_low_10 (Length: 238)

Name: NF2027_low_10
Description: NF2027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2027_low_10
NF2027_low_10
[»] chr5 (1 HSPs)
chr5 (17-238)||(28478320-28478541)
[»] chr1 (5 HSPs)
chr1 (15-78)||(12093875-12093938)
chr1 (47-100)||(18565104-18565157)
chr1 (48-99)||(28303401-28303451)
chr1 (47-105)||(460883-460941)
chr1 (47-89)||(19809072-19809114)
[»] chr3 (4 HSPs)
chr3 (47-105)||(21144016-21144074)
chr3 (47-78)||(32783413-32783444)
chr3 (39-83)||(3041584-3041628)
chr3 (47-83)||(46560528-46560564)
[»] chr6 (1 HSPs)
chr6 (37-102)||(28089118-28089183)
[»] chr8 (2 HSPs)
chr8 (49-85)||(31562687-31562723)
chr8 (39-94)||(44961981-44962036)
[»] chr4 (3 HSPs)
chr4 (47-105)||(5078945-5079003)
chr4 (37-83)||(40829696-40829742)
chr4 (53-85)||(42813531-42813563)
[»] chr2 (1 HSPs)
chr2 (47-105)||(42467873-42467931)


Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 28478320 - 28478541
Alignment:
Q  17 actttatgattaattaattactacacctaattatattcattaatcatccactaaacataattaaccatgtattcaaactgcattaaccaacaaattatta 116  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28478320 actttatgattaattaattacgacacctaattatattcattaaccatccactaaacataattaaccatgtattcaatctgcattaaccaacaaattatta 28478419  T
Q  117 taataaaaattgattttatatattttaatttgtaaccactaatcttaaccatataattgaaccattcattatttaactnnnnnnncattcaaagaggact 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  28478420 taataaaaattgattttatatattttaatttgtaaccactaatcttaaccatataattgaaccattcattatttaactaaaaaaacattcaaagaggact 28478519  T
Q  217 tactatcagctgcagaagcttt 238  Q
    ||||||||||||||||||||||    
T  28478520 tactatcagctgcagaagcttt 28478541  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 12093875 - 12093938
Alignment:
Q  15 tcactttatgattaattaattactacacctaattatattcattaatcatccactaaacataatt 78  Q
    |||||| ||| ||||||| || |||||||| |||||||| |||||||||||||||||| |||||    
T  12093875 tcacttgatggttaattagttgctacaccttattatattaattaatcatccactaaacgtaatt 12093938  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 18565157 - 18565104
Alignment:
Q  47 ttatattcattaatcatccactaaacataattaaccatgtattcaaactgcatt 100  Q
    |||||||||||||||||| |||||||||||| |||||| |||| ||| ||||||    
T  18565157 ttatattcattaatcatctactaaacataatgaaccatatatttaaattgcatt 18565104  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 28303401 - 28303451
Alignment:
Q  48 tatattcattaatcatccactaaacataattaaccatgtattcaaactgcat 99  Q
    |||||||||||| |||| || ||||||||||||||||||||| |||||||||    
T  28303401 tatattcattaa-catctacaaaacataattaaccatgtatttaaactgcat 28303451  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 460883 - 460941
Alignment:
Q  47 ttatattcattaatcatccactaaacataattaaccatgtattcaaactgcattaacca 105  Q
    |||||||||||||||||| ||||||||||||||  ||| |||| ||| || ||||||||    
T  460883 ttatattcattaatcatctactaaacataattagtcatatatttaaattgtattaacca 460941  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 19809072 - 19809114
Alignment:
Q  47 ttatattcattaatcatccactaaacataattaaccatgtatt 89  Q
    |||||||||||||||||| ||||||  ||||||||||||||||    
T  19809072 ttatattcattaatcatctactaaatgtaattaaccatgtatt 19809114  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 21144016 - 21144074
Alignment:
Q  47 ttatattcattaatcatccactaaacataattaaccatgtattcaaactgcattaacca 105  Q
    ||||||||||||| |||| ||| ||||||||||||||||||||  || |||||||||||    
T  21144016 ttatattcattaaccatctacttaacataattaaccatgtatttgaattgcattaacca 21144074  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 78
Target Start/End: Original strand, 32783413 - 32783444
Alignment:
Q  47 ttatattcattaatcatccactaaacataatt 78  Q
    ||||||||||||||||||||||||||||||||    
T  32783413 ttatattcattaatcatccactaaacataatt 32783444  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 3041584 - 3041628
Alignment:
Q  39 acacctaattatattcattaatcatccactaaacataattaacca 83  Q
    |||||| |||||||| |||||||||||||||||  ||||||||||    
T  3041584 acaccttattatatttattaatcatccactaaatgtaattaacca 3041628  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 46560564 - 46560528
Alignment:
Q  47 ttatattcattaatcatccactaaacataattaacca 83  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  46560564 ttatattcattaaccatccacttaacataattaacca 46560528  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 28089183 - 28089118
Alignment:
Q  37 ctacacctaattatattcattaatcatccactaaacataattaaccatgtattcaaactgcattaa 102  Q
    ||||||||  |||||| |||||| |||| ||||||||||||||||||||||||  |||||| ||||    
T  28089183 ctacaccttgttatatccattaaccatctactaaacataattaaccatgtatttgaactgcgttaa 28089118  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 31562723 - 31562687
Alignment:
Q  49 atattcattaatcatccactaaacataattaaccatg 85  Q
    |||||||||||||||| ||||||||||||||||||||    
T  31562723 atattcattaatcatctactaaacataattaaccatg 31562687  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 44961981 - 44962036
Alignment:
Q  39 acacctaattatattcattaatcatccactaaacataattaaccatgtattcaaac 94  Q
    |||||| |||||||||||||  |||||||| ||| |||||||||| ||||||||||    
T  44961981 acaccttattatattcattatccatccactgaacgtaattaaccacgtattcaaac 44962036  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 5079003 - 5078945
Alignment:
Q  47 ttatattcattaatcatccactaaacataattaaccatgtattcaaactgcattaacca 105  Q
    ||||||||| |||||||| ||||||  ||||||||||| ||||  ||||||||||||||    
T  5079003 ttatattcactaatcatctactaaatgtaattaaccatatatttgaactgcattaacca 5078945  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 40829696 - 40829742
Alignment:
Q  37 ctacacctaattatattcattaatcatccactaaacataattaacca 83  Q
    ||||||||  |||||||||||||||||| ||||||| ||||||||||    
T  40829696 ctacaccttgttatattcattaatcatcaactaaacgtaattaacca 40829742  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 42813531 - 42813563
Alignment:
Q  53 tcattaatcatccactaaacataattaaccatg 85  Q
    ||||| |||||||||||||||||||||||||||    
T  42813531 tcattgatcatccactaaacataattaaccatg 42813563  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 42467873 - 42467931
Alignment:
Q  47 ttatattcattaatcatccactaaacataattaaccatgtattcaaactgcattaacca 105  Q
    ||||| || |||| |||||||||||||||||||||||  ||||  ||||||||||||||    
T  42467873 ttatactcgttaagcatccactaaacataattaaccacatatttgaactgcattaacca 42467931  T

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