View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2027_low_11 (Length: 237)
Name: NF2027_low_11
Description: NF2027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2027_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41967842 - 41968061
Alignment:
| Q |
1 |
gtatgagaaatataaatttgacaatggatacagtattaaactatnnnnnnnntgtctcaagcatgtataaaataattttcttttatttcttgaggaaaaa |
100 |
Q |
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| T |
41967842 |
gtatgagaaatataaatttgacaatggatacagtattaaactataaaaaaa-tgtctcaagcatgtataaaataattttcttttatttcttgaggaaaaa |
41967940 |
T |
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| Q |
101 |
ctaaacgaatgttgtggtatagtacatgatgagaaatgaaaaaacataattcaaggacattttggtcctccttctttggtcttccaatcgttatagcacg |
200 |
Q |
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| T |
41967941 |
ctaaacgaatgttgtggtatagtacatgatgagaaatgaaaaaacataattcaaggacattttggtcctccttctttggtcttccaatcgttatagcacg |
41968040 |
T |
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| Q |
201 |
gacaaacttccttgtttccat |
221 |
Q |
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| T |
41968041 |
gacaaacttccttgtttccat |
41968061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 107 - 221
Target Start/End: Original strand, 1234954 - 1235069
Alignment:
| Q |
107 |
gaatgttgtggtatagtacatgatgagaaatgaaaa-aacataattcaaggacattttggtcctccttctttggtcttccaatcgttatagcacggacaa |
205 |
Q |
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| T |
1234954 |
gaatgttgtggtatagtacatgatgagaaatgaaaaaaacataattcaaggacattttggtcctccttctttagtcttccagtcgttatagcacggacaa |
1235053 |
T |
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| Q |
206 |
acttccttgtttccat |
221 |
Q |
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| T |
1235054 |
acttccttgtttccat |
1235069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 1234829 - 1234917
Alignment:
| Q |
8 |
aaatataaatttgacaatggatacagtattaaactatnnnnnnnntgtctcaagcatgtataaaataattttcttttatttcttgaggaa |
97 |
Q |
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|||||||||| |||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1234829 |
aaatataaatgtgacaatggatacagtattaaactttaaaaaaaa-gtctcaaacatgtataaaataattttcttttatttcttgaggaa |
1234917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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