View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2027_low_3 (Length: 485)
Name: NF2027_low_3
Description: NF2027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2027_low_3 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 479
Target Start/End: Original strand, 39704239 - 39704696
Alignment:
| Q |
19 |
aggacatgtgttgaatattcttgggatggttgcttctgctcttgttgaatcaaagaggctcaaattagtacatgtgcataatgtttccatgtctgtgtta |
118 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||| |
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| T |
39704239 |
aggacatgtgttgactgttcttggcatggttgtctctgctcttgttgaatcaaagaggctcaaattggtacatgtgcat---gtggaaatgtctgtgtta |
39704335 |
T |
|
| Q |
119 |
tggttgtttccacagttagtgttggttggtattggagaagcttttcattttcctggacaagttacattctactaccaacaatttccacaatcacttaaga |
218 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
39704336 |
tggttgtttccacaattagtgttggttggtattggagaagcttttcattttcctggacaagttacattctattatcaacaatttccacaatcacttaaga |
39704435 |
T |
|
| Q |
219 |
acacatcaacagcaatgatttcaatgcttatagggattgctttttatttgagcactgctttaattgaccaggttcgtaggagtactgattggttacctga |
318 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
39704436 |
tcacatcaactgcaatgatttcaatgcttataggtattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctga |
39704535 |
T |
|
| Q |
319 |
tgaaataaatcatggcaaggttgataatgtgtattggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39704536 |
tgaaataaatcatggcaaggttgataatgtgtattggatgttggtcatgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaag |
39704635 |
T |
|
| Q |
419 |
tatgaaaatgtttacgaggttatgatgttatgatgaatgttatctgtgtttggttggaata |
479 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39704636 |
tatgaaaatgtttaagaggttatgatgttatgatgaatgttatctgtgtttggttggaata |
39704696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Original strand, 39695327 - 39695740
Alignment:
| Q |
19 |
aggacatgtgttgaatattcttgggatggttgcttctgctcttgttgaatcaaagaggctcaaattagtacatgtgcataatgtttccatgtctgtgtta |
118 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39695327 |
aggacatgtgttgactgttcttggcatggttgtctctgctcttgttgaatcaaagagactcaaattagtacatgtgcataatgtttccatgtctgtgtta |
39695426 |
T |
|
| Q |
119 |
tggttgtttccacagttagtgttggttggtattggagaagcttttcattttcctggacaagttacattctactaccaacaatttccacaatcacttaaga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39695427 |
tggttgtttccacagttagtgttggttggtattggagaagcttttcattttcctggacaagttacattctactaccaacaatttccacaatcacttaaga |
39695526 |
T |
|
| Q |
219 |
acacatcaacagcaatgatttcaatgcttatagggattgctttttatttgagcactgctttaattgaccaggttcgtaggagtactgattggttacctga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39695527 |
acacatcaacagcaatgatttcaatgcttataggaattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctga |
39695626 |
T |
|
| Q |
319 |
tgaaataaatcatggcaaggttgataatgtgtattggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||| || |||||||||||||||||||| |
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|
| T |
39695627 |
tgaaataaatcatggcaaggttgataatgtgtattggatgttagtagtgtttggaggtatcaactttgtgtattacctattgtgctctatttcttacaag |
39695726 |
T |
|
| Q |
419 |
tatgaaaatgttta |
432 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
39695727 |
tatgaaaatgttta |
39695740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 424
Target Start/End: Complemental strand, 39934788 - 39934381
Alignment:
| Q |
19 |
aggacatgtgttgaatattcttgggatggttgcttctgctcttgttgaatcaaagaggctcaaattagtacatgtgcata--atgtttccatgtctgtgt |
116 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||| |||| |
|
|
| T |
39934788 |
aggacatgtgttgactgttcttggcatggttgtctctgctcttgttgaatcaaagagactcaaattagcacatgtgcatataatgtttccatgtccgtgt |
39934689 |
T |
|
| Q |
117 |
tatggttgtttccacagttagtgttggttggtattggagaagcttttcattttcctggacaagttacattctactaccaacaatttccacaatcacttaa |
216 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
39934688 |
tatggttttttccacaattagtgttggttggtattggagaagcttttcattttcctggacaagttacattctattatcaacaatttccacaatcacttaa |
39934589 |
T |
|
| Q |
217 |
gaacacatcaacagcaatgatttcaatgcttatagggattgctttttatttgagcactgctttaattgaccaggttcgtaggagtactgattggttacct |
316 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39934588 |
gagcacatcaactgcaatgatttcaatgcttataggaattgctttttacttgagcactgctttaattgaccaagttcgtaggagtactgattggttacct |
39934489 |
T |
|
| Q |
317 |
gatgaaataaatcatggcaaggttgataatgtgtattggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttaca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39934488 |
gatgaaataaatcatggcaaggttgataatgtgtattggatgttagtcgtgtttggagctatcaactttgtgtattatttactgtgctctatttcttaca |
39934389 |
T |
|
| Q |
417 |
agtatgaa |
424 |
Q |
| |
|
| |||||| |
|
|
| T |
39934388 |
aatatgaa |
39934381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 462
Target Start/End: Complemental strand, 39929136 - 39928696
Alignment:
| Q |
19 |
aggacatgtgttgaatattcttgggatggttgcttctgctcttgttgaatcaaagaggctcaaattagtacatgtgcataatgtttccatgtctgtgtta |
118 |
Q |
| |
|
|||||||||||| ||| ||||||| ||||| | ||||||||||||||||| ||||| |||||||||| |||| ||| ||||| |||||||| ||| |
|
|
| T |
39929136 |
aggacatgtgttcaatgttcttggcatggtggtctctgctcttgttgaatcgaagagactcaaattagcgcatgaacat---gtttcaatgtctgtatta |
39929040 |
T |
|
| Q |
119 |
tggttgtttccacagttagtgttggttggtattggagaagcttttcattttcctggacaagttacattctactaccaacaatttccacaatcacttaaga |
218 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| || |||| |
|
|
| T |
39929039 |
tggttgtttccacaattagtgttggttggtatcggagaagcgtttcattttcctggacaagttacattctattatcaacaatttccacaatcgctaaaga |
39928940 |
T |
|
| Q |
219 |
acacatcaacagcaatgatttcaatgcttatagggattgctttttatttgagcactgctttaattgaccaggttcgtaggagtactgattggttacctga |
318 |
Q |
| |
|
||||||||| |||| | ||||||||||||||||| |||||||||| |||||| ||| |||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
39928939 |
gcacatcaactgcaacggtttcaatgcttataggggttgctttttacatgagcaatgcattaattgatcaagttcgtaggagtactgattggttacctga |
39928840 |
T |
|
| Q |
319 |
tgaaataaatcatggcaaggttgataatgtgtattggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaag |
418 |
Q |
| |
|
||| ||||||||||| ||| |||| |||||||| |||||||| ||| | | || | ||| |||||||||||||||||| | || ||| | |||||||| |
|
|
| T |
39928839 |
tgacataaatcatgggaagattgacaatgtgtactggatgttagtcctactcgggggtataaactttgtgtattacttattttgttcttctccttacaag |
39928740 |
T |
|
| Q |
419 |
tatgaaaatgtttacgaggttatgatgttatgatgaatgttatc |
462 |
Q |
| |
|
|||||||||||||| |||| | |||||||||||| ||||||||| |
|
|
| T |
39928739 |
tatgaaaatgtttaagaggatgtgatgttatgataaatgttatc |
39928696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 38061808 - 38061607
Alignment:
| Q |
24 |
atgtgttgaatattcttgggatggttgcttctgctcttgttgaatcaaagaggctcaaattagtacatgtgcataatgtttccatgtctgtgttatggtt |
123 |
Q |
| |
|
||||||||| ||||| || ||||||| || ||||||||||| |||| || |||||||||| |||||| ||| || |||||||||||||| || |
|
|
| T |
38061808 |
atgtgttgaccattctgggtatggttgtctccgctcttgttgagacaaaaagactcaaattagcacatgttcat---gtggaaatgtctgtgttatgttt |
38061712 |
T |
|
| Q |
124 |
gtttccacagttagtgttggttggtattggagaagcttttcattttcctggacaagttacattctactaccaacaatttccacaatcacttaagaacaca |
223 |
Q |
| |
|
||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |||| |||| |
|
|
| T |
38061711 |
gtttccacaattaatgctggtgagtattggagaagcttttcattttcctggacaagttacattctattatcaacaatttccacagtcactgaagagcaca |
38061612 |
T |
|
| Q |
224 |
tcaac |
228 |
Q |
| |
|
||||| |
|
|
| T |
38061611 |
tcaac |
38061607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 462
Target Start/End: Complemental strand, 38059047 - 38058936
Alignment:
| Q |
351 |
attggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaagtatgaaaatgtttacgaggttatgatgttatg |
450 |
Q |
| |
|
||||||||||||| || ||||| | |||||||||| |||||||||| | || ||| | |||||||||||||||||| || |||| | | |||||||| |
|
|
| T |
38059047 |
attggatgttggttgtatttgggggtatcaactttaggtattacttattttgttcttctgtttacaagtatgaaaatgtgtaagaggatgtaatgttatg |
38058948 |
T |
|
| Q |
451 |
atgaatgttatc |
462 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
38058947 |
ataaatgttatc |
38058936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 333
Target Start/End: Complemental strand, 38059126 - 38059050
Alignment:
| Q |
257 |
gctttttatttgagcactgctttaattgaccaggttcgtaggagtactgattggttacctgatgaaataaatcatgg |
333 |
Q |
| |
|
|||||| | ||||||||| ||||| ||||||| | | ||||| |||| |||||||||| ||||| ||||||||||| |
|
|
| T |
38059126 |
gcttttaacttgagcactactttagttgaccaaatccataggattactaattggttaccagatgacataaatcatgg |
38059050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 4847134 - 4847209
Alignment:
| Q |
172 |
tggacaagttacattctactaccaacaatttccacaatcacttaagaacacatcaacagcaatgatttcaatgctt |
247 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||||||||| | || || ||||||||| ||||||||||||||||| |
|
|
| T |
4847134 |
tggagaagttacattttactacaaacaatttccacaataatttttgagcacatcaactccaatgatttcaatgctt |
4847209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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