View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2027_low_6 (Length: 338)
Name: NF2027_low_6
Description: NF2027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2027_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 7 - 318
Target Start/End: Original strand, 54616941 - 54617250
Alignment:
| Q |
7 |
atgtcgaagaatatgttttggtggcaaagcaaatactgttttaacattttcattacttttcttaatattaagactggaaaaagtggaagaaaaatgggat |
106 |
Q |
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| T |
54616941 |
atgtcgaaaagtatgttttggtggcaaagcaaatactgttttaacattttcattacttttcttaatattaagactggaaaaagtggaagaaaaatgggat |
54617040 |
T |
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| Q |
107 |
ccctcannnnnnncatgaagaagcataaaatatgatattgacattattgactttacctttccccaattttcttggatggatttatgggctgctcgtaaat |
206 |
Q |
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| T |
54617041 |
ccctcatttttttcatgaagaagcataaaat--gatattgacattattgactttacctttccccaattttcttggatggatttatgggctgctcgtaaat |
54617138 |
T |
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| Q |
207 |
tatagctcggtattttcggggatatatggtgtggaatatggacattaatatcatggcataggatctcgatcctgtacagaaaagaagtcagaataaagcg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54617139 |
tatagctcggtattttcggggatatatggtgtggaatatggacattaatatcatggcataggatctcgatcctgtacagaaaagaagtcagaatatagcg |
54617238 |
T |
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| Q |
307 |
gttagtcaatat |
318 |
Q |
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| T |
54617239 |
gttagtcaatat |
54617250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 159 - 273
Target Start/End: Original strand, 25077820 - 25077934
Alignment:
| Q |
159 |
ttacctttccccaattttcttggatggatttatgggctgctcgtaaattatagctcggtattttcggggatatatggtgtggaatatggacattaatatc |
258 |
Q |
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|||||||||||||||||||||| | ||||| |||||||| ||||| |||||||| ||||| || ||||||||||| || |||||||||||||| ||||| |
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| T |
25077820 |
ttacctttccccaattttcttgtagagatttgtgggctgcacgtaagttatagcttggtatctttggggatatatgatgaggaatatggacattgatatc |
25077919 |
T |
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| Q |
259 |
atggcataggatctc |
273 |
Q |
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| T |
25077920 |
atggcagaggatctc |
25077934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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