View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2027_low_8 (Length: 286)
Name: NF2027_low_8
Description: NF2027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2027_low_8 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 4109726 - 4109994
Alignment:
| Q |
18 |
tctaatagaggcatgaaaagtaaaaaccatggaattgtgggcatgagctgcaagaatccagtttctgtaaggaaaattcagatttgatcatttcatttta |
117 |
Q |
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| T |
4109726 |
tctaatagaagcatgaaaagtaaaaaccatagaattgtgggcatgagctgcaagaatccagattctgttaggaaaattcagacttgatcatttcatttta |
4109825 |
T |
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| Q |
118 |
agttcctttgactcatctatatcccttaaatgtccaccttcaaaattttaaataccatgtttgcataacatattacatcctggtgcagatttttaatttc |
217 |
Q |
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| T |
4109826 |
agttcctttgactcatctatatcccttaaatgtccaccttcaaaattttaaataccatctttgcataacatattacatcatggtgcagatttttaatttc |
4109925 |
T |
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| Q |
218 |
tatgaaaaagacagcccgtagcaattcattgaacattgacacgacaagaacttaaacacagaacatctc |
286 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4109926 |
tatgaaaaagacagccggtagcaattcattgaacattgacacgacaagaacttaaacacagaacatctc |
4109994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 4385420 - 4385149
Alignment:
| Q |
15 |
aaatctaatagaggcatgaaaagtaaaaaccatggaattgtgggcatgagctgcaagaatccagtttctgtaaggaaaattcagatttgatcatttcatt |
114 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4385420 |
aaatctaatagaggcatgaaaagttaaaaccatggaattgtgggcatgagctgcaaaaatccagtttctgtaaggaaaattcagatttgatcatttcatt |
4385321 |
T |
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| Q |
115 |
ttaagttcctttgactcatctatatcccttaaatgtccaccttcaaaattttaaataccatgtttgcataacatattacatcctggtgcagatttttaat |
214 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
4385320 |
ttaagttcctttgactgatctatatcccttaaatgtcctccttcaaaattttaaataccatttttgcataacatattacatcatggtgcagatttttaat |
4385221 |
T |
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| Q |
215 |
ttctatgaaaaagacagcccgtagcaattcattgaacattgacacgacaagaacttaaacacagaacatctc |
286 |
Q |
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|||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4385220 |
ttctataaaaaagacaataggtagaaattcattgaacattgacacgacaagaacttaaacacagaacatctc |
4385149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 4110580 - 4110641
Alignment:
| Q |
34 |
aaagtaaaaaccatggaattgtgggcatgagctgcaagaatccagtttctgtaaggaaaatt |
95 |
Q |
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|||||| |||||| ||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
4110580 |
aaagtacaaaccagagaattgtcagcatgagctgcaagaatccagattctgtaaggaaaatt |
4110641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 4132906 - 4132982
Alignment:
| Q |
18 |
tctaatagaggcatgaaaagtaaaaaccatggaattgtgggcatgagctgcaagaatccagtttctgtaaggaaaat |
94 |
Q |
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||||| ||| ||||| |||||| |||||| |||||||| ||||||||||||||||||||| ||||| ||| ||||| |
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| T |
4132906 |
tctaaaagaagcatggaaagtacaaaccagagaattgtgtgcatgagctgcaagaatccagattctgcaagaaaaat |
4132982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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