View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20280_high_2 (Length: 521)
Name: NF20280_high_2
Description: NF20280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20280_high_2 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 15 - 521
Target Start/End: Complemental strand, 2794671 - 2794165
Alignment:
| Q |
15 |
ttatactcttctccaagttcttctccctctctatagtagaggctttcacaacatataactcctccaaaattgactccaaattcgaccccttcatctcttc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2794671 |
ttatactcttctccaagttcttctccctctctatagtagaggctttcacagcatataactcctccaaaattgactccaaattcgaccccttcatctcttc |
2794572 |
T |
|
| Q |
115 |
ctcaattttatccctctcttcttgatccctcgccctggccaagctagtacaccacacaatcttcaacttattctgcatcagaaacttaacaagactaaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2794571 |
ctcaattttatccctctcttcttgatccctcgccctggccaagctagtacaccacacaatcttcaacttattctgcattagaaacttaacaagactaaac |
2794472 |
T |
|
| Q |
215 |
ttattcaaatcaaaataccccagcaacctcttctccacttctcggtcatcagcctcacccaaaaccttcaacacctcttcagcaagccttcgacaatttt |
314 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2794471 |
ttattcaaatcaaaataccccaacaacctcttctccacttctctgtcatcagcctcacccaaaaccttcaacacctcttcagcaagccttcgacaatttt |
2794372 |
T |
|
| Q |
315 |
ctggatcaatctctggtccaaaagccggctagattttcctctgaagccaatacgcatcaatatcatgcacattcaattcttcatcatctactttctcaat |
414 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2794371 |
ccggatcaatctctggtccaaaagccggcgagattttcctctgaagccaatacgcatcaatatcatgcacattcaattcttcatcatctactttctcaat |
2794272 |
T |
|
| Q |
415 |
ttcttcaacaacaattccaccacctatttgcattgcatagtcacctatttcaaaaatctcatcctcatcctcttcttcctcctccaccaccatatcaaca |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2794271 |
ttcttcaacaacaattccaccacctatttgcattgcatagtcacctatttcaaaaatctcatcctcatcctcttcttcctcctccaccaccacatcaaca |
2794172 |
T |
|
| Q |
515 |
tccttct |
521 |
Q |
| |
|
||||||| |
|
|
| T |
2794171 |
tccttct |
2794165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 218
Target Start/End: Complemental strand, 29262049 - 29261933
Alignment:
| Q |
102 |
ccttcatctcttcctcaattttatccctctcttcttgatccctcgccctggccaagctagtacaccacacaatcttcaacttattctgcatcagaaactt |
201 |
Q |
| |
|
||||||||||||||||||| | || |||||||| ||||| ||||| ||||| | ||||||||||| ||| |||| | |||| ||| || |||||| |
|
|
| T |
29262049 |
ccttcatctcttcctcaatcgtctctctctcttcctgatcttgtgccctcgccaaacgagtacaccacaaaattttcagcctatttcgcaacaaaaactt |
29261950 |
T |
|
| Q |
202 |
aacaagactaaacttat |
218 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
29261949 |
aataagactaaacttat |
29261933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University