View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20280_low_1 (Length: 526)
Name: NF20280_low_1
Description: NF20280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20280_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 247 - 519
Target Start/End: Complemental strand, 1139842 - 1139556
Alignment:
| Q |
247 |
tatgccaattttgtaggttattttttcattctagattagtttcttttcacaaattattgtggttctatttatctttttgtagtttaatgttctgttatat |
346 |
Q |
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| T |
1139842 |
tatgccaattttgtaggttattttttcattctaaattagtttcttttcacaaattattgtggttctatttatctttttgtagtttaatgatctgtttttt |
1139743 |
T |
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| Q |
347 |
attct---tcaattatat-----------atatacgattaacaatttcaaaattggtatgaatcttcattgtcatttgggattctcttttgaattttaag |
432 |
Q |
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| T |
1139742 |
tttctctttctgttatattttcttcaattatatacgattaacaatttcaaaattgatatgaatcttcattgtcatttgagattttcttttgaattttaag |
1139643 |
T |
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| Q |
433 |
atgattttattcatatcacaaataattaaacctaaccttgcattgatgcaataatatataactttatcgacaattttaacacctttg |
519 |
Q |
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| T |
1139642 |
attattttattcatatcacaaataattaaacctaaccttgcattgatgcaataatatataaatttatcgacaattttaacacctttg |
1139556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 1140441 - 1140352
Alignment:
| Q |
18 |
gatattaaaatggaaactttcacactagagagagatgggttccataggtagcatggattcacgagggcaaaaacaggaattaacaggaaa |
107 |
Q |
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| T |
1140441 |
gatattaaaaaagaaacattcacactagagagagatgggttccataggtagcatggattcacgagggcaaaaacaggaattaacaggaaa |
1140352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 1139955 - 1139927
Alignment:
| Q |
130 |
aagagtgaaggcattaacgtgagtatggg |
158 |
Q |
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| T |
1139955 |
aagagtgaaggcattaacgtgagtatggg |
1139927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 1140272 - 1140240
Alignment:
| Q |
104 |
gaaaagaaaccgtccattaaatcgtcaagagtg |
136 |
Q |
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| T |
1140272 |
gaaaagaaaccgtccattaaatcgtgaagagtg |
1140240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 456
Target Start/End: Complemental strand, 32618034 - 32617991
Alignment:
| Q |
413 |
attctcttttgaattttaagatgattttattcatatcacaaata |
456 |
Q |
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| T |
32618034 |
attctcttttgaattttaagatgattatatttagatcacaaata |
32617991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 14604880 - 14604920
Alignment:
| Q |
413 |
attctcttttgaattttaagatgattttattcatatcacaa |
453 |
Q |
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| T |
14604880 |
attctcttttgaattttaagatgattatatttagatcacaa |
14604920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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