View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20281_high_8 (Length: 286)
Name: NF20281_high_8
Description: NF20281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20281_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 34476384 - 34476646
Alignment:
| Q |
17 |
acgaacaaggtgccttgaggaataagaaacaggtggaataattgtctcatcctgctatctattatgaattttgtggttattcatatttatagggagggta |
116 |
Q |
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| T |
34476384 |
acgaacaaggtgccttgaggaataagaaacaggtggaataattgtctcatcctgctatctattatgaattttgtggttactcatatttatagggaggata |
34476483 |
T |
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| Q |
117 |
atacttgtgccgatgctttagcaaacattggcttatctttgaactcttttgtctattactatactattcatgttgaagttaggagtgattatgataaaag |
216 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34476484 |
atacttgtgctgatgctttagcaaacattggcttatctttgaactcttttgtctattactatactattcatgttgaagttaggagtgattatgataaaag |
34476583 |
T |
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| Q |
217 |
taagattggttgacctaattttaggtttactcattttttagaaggtcttggcactcccctttg |
279 |
Q |
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| T |
34476584 |
taagattggttgacctaattttaggtttactcattttttagaaggtcttggcactcccctttg |
34476646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 265
Target Start/End: Complemental strand, 22808460 - 22808278
Alignment:
| Q |
83 |
aattttgtggttattcatatttatagggagggtaatacttgtgccgatgctttagcaaacattggcttatctttgaactcttttgtctattactatacta |
182 |
Q |
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| T |
22808460 |
aattttgtagtttctcatgtttgtagagaaggaaatacctgtgcagatgctttagctaacataggattaagcttgaacacttttgtttattatagcacta |
22808361 |
T |
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| Q |
183 |
ttcatgttgaagttaggagtgattatgataaaagtaagattggttgacctaattttaggtttactcattttttagaaggtctt |
265 |
Q |
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| T |
22808360 |
ttccattggatgttaggggttattatgttaaaaataggcttggttgacctaattttaggtttactcactcttgagaaggtctt |
22808278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 262
Target Start/End: Complemental strand, 34028698 - 34028628
Alignment:
| Q |
192 |
aagttaggagtgattatgataaaagtaagattggttgacctaattttaggtttactcattttttagaaggt |
262 |
Q |
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|||||||||||||||||| ||||| || | ||||||| |||||||||||||||| ||| | || ||||||| |
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| T |
34028698 |
aagttaggagtgattatgttaaaaataggtttggttggcctaattttaggtttaatcactattgagaaggt |
34028628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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