View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20281_low_2 (Length: 490)
Name: NF20281_low_2
Description: NF20281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20281_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 259 - 471
Target Start/End: Original strand, 18787149 - 18787359
Alignment:
| Q |
259 |
ctgcagctgtgtcaaatacgagcatcctgttggtggtacaagtcatgttcagcatctactatgtggtgtaaaccttcccgaaaaggtaaaattctgttgg |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18787149 |
ctgcagctgtgtcaaatacgagcatcctgttggtggtacaagtcatgttcagcatctactatgtggtgtaaaccttcccgaaaaggtaaaattttgttgg |
18787248 |
T |
|
| Q |
359 |
ttaattattaaacgaatttctgatcaagaaaatttgttagctaacgacaaaatcgattaggatggacaaaaggaaggatataagaaatgtgacttatatt |
458 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18787249 |
ttaat--ataaacgaatttctgatcaagaaaatttgttagctaacgacaaaatcgattaggatggacaaaaggaaggttataagaaatgtgacttatatt |
18787346 |
T |
|
| Q |
459 |
acctaatactacg |
471 |
Q |
| |
|
||||||||||||| |
|
|
| T |
18787347 |
acctaatactacg |
18787359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 18786995 - 18787085
Alignment:
| Q |
107 |
agcagcgacggcattggagggatcataagtctttgccacgagtgtgttgagaacaacaaacaagaagatattgtattgtatgctattaaac |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18786995 |
agcagcgacggcattggagggatcataagtctttgccacgagtgtgttgagaacaacaaacatgaagatattgtattgtatgctattaaac |
18787085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 18786899 - 18786949
Alignment:
| Q |
11 |
tcgaagaatatgtacagcttctgcatatatattgtgtaagaattaaggaag |
61 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
18786899 |
tcgaacaatatgtacagcttctgaatatatattgtgttagaaataaggaag |
18786949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University