View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20281_low_6 (Length: 344)

Name: NF20281_low_6
Description: NF20281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20281_low_6
NF20281_low_6
[»] chr7 (2 HSPs)
chr7 (16-327)||(3597106-3597417)
chr7 (144-202)||(37358574-37358632)
[»] chr3 (1 HSPs)
chr3 (18-75)||(13363211-13363268)
[»] chr8 (3 HSPs)
chr8 (243-306)||(29512905-29512968)
chr8 (230-291)||(44140994-44141055)
chr8 (262-306)||(19649260-19649304)
[»] scaffold0009 (1 HSPs)
scaffold0009 (262-306)||(199360-199404)
[»] chr2 (2 HSPs)
chr2 (262-306)||(23377579-23377623)
chr2 (219-285)||(33019096-33019162)
[»] chr6 (2 HSPs)
chr6 (219-285)||(4910987-4911053)
chr6 (219-283)||(4908041-4908105)
[»] chr4 (2 HSPs)
chr4 (219-277)||(21691160-21691218)
chr4 (230-306)||(50061558-50061633)
[»] chr1 (3 HSPs)
chr1 (225-285)||(2099627-2099687)
chr1 (225-285)||(30557587-30557647)
chr1 (219-251)||(34875063-34875095)


Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 327
Target Start/End: Complemental strand, 3597417 - 3597106
Alignment:
Q  16 agttacaagttaatcaatgtgtgattgttggataagcgcaagatcaagtactatatcagtgaggtatgtgttttagagatggcttttttggtttgtaatg 115  Q
    ||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3597417 agttacaagttaaccaatgtgtgattttcggataagcgcaagatcaagtactatatcagtgaggtatgtgttttagagatggctattttggtttgtaatg 3597318  T
Q  116 cctgaactttgattttgctattaatggtcatagcatgttcgactggttttgtgttgctatctttggaatgtaaatcgtataatataatgtttttaagaat 215  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  3597317 cctgaactttgattttgttattaatggtcatagcatgttcaactggttttgtgttgctatctttggaatgtaaatcatataatataatgtttttaaaaat 3597218  T
Q  216 caattttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgtacaaccaaacacgcacgcaaa 315  Q
    ||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3597217 caattttgcatgaatgtatctaaagacaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgtacaaccaaacacgcacgcaaa 3597118  T
Q  316 taggttctggta 327  Q
    ||||||||||||    
T  3597117 taggttctggta 3597106  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 37358632 - 37358574
Alignment:
Q  144 catagcatgttcgactggttttgtgttgctatctttggaatgtaaatcgtataatataa 202  Q
    ||||||| ||||  ||||||||||||||||||| ||| |||||||||  ||||||||||    
T  37358632 catagcaggttcagctggttttgtgttgctatcgttgtaatgtaaattatataatataa 37358574  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 13363268 - 13363211
Alignment:
Q  18 ttacaagttaatcaatgtgtgattgttggataagcgcaagatcaagtactatatcagt 75  Q
    ||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||    
T  13363268 ttacaagttaaccaatatgtgattgttggataagcccaagatcaagtactatatcagt 13363211  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 29512905 - 29512968
Alignment:
Q  243 aaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 306  Q
    |||||| || |||| ||||||||||||||||||||| |||||| | ||||| ||||||||||||    
T  29512905 aaatcagttttagtcaaaatcacttttaaccaaaatcaattctccacaccgcacaaccaaacac 29512968  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 44141055 - 44140994
Alignment:
Q  230 tttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccac 291  Q
    |||||||||| | || |||||| |||| | ||||||||||||||||||| |||||| |||||    
T  44141055 tttatccaaacacaattcacttttagtcagaatcacttttaaccaaaatcaattctccccac 44140994  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 19649260 - 19649304
Alignment:
Q  262 tcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 306  Q
    ||||||||||||||||| |||| || |||||| ||||||||||||    
T  19649260 tcacttttaaccaaaatcaattttttccaccgcacaaccaaacac 19649304  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 199404 - 199360
Alignment:
Q  262 tcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 306  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||    
T  199404 tcacttttaaccaaaatcaattctttccaccgcacaaccaaacac 199360  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 23377579 - 23377623
Alignment:
Q  262 tcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 306  Q
    |||||||||||||||||||||| || |||||| ||||||||||||    
T  23377579 tcacttttaaccaaaattaattttttccaccgcacaaccaaacac 23377623  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 33019162 - 33019096
Alignment:
Q  219 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 285  Q
    |||| |||||||  ||||||| | ||||||||| |||| | ||||||||||||||||||| ||||||    
T  33019162 ttttacatgaatgcatccaaacacaaatcacttttagtcagaatcacttttaaccaaaatcaattct 33019096  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 4910987 - 4911053
Alignment:
Q  219 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 285  Q
    |||| ||| ||| |||||||| | ||||||||| |||| | ||| ||||||||||||||||||||||    
T  4910987 ttttacataaatgtatccaaacataaatcacttttagtcagaattacttttaaccaaaattaattct 4911053  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 4908041 - 4908105
Alignment:
Q  219 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaatt 283  Q
    |||| ||||| |||||||||| | ||||||||| |||  | ||||||||||||||||||| ||||    
T  4908041 ttttacatgattttatccaaacacaaatcacttttaggaagaatcacttttaaccaaaatcaatt 4908105  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 21691218 - 21691160
Alignment:
Q  219 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaa 277  Q
    |||| ||||||| |||||||| | ||||||||| |||| | ||||||||||||||||||    
T  21691218 ttttacatgaatatatccaaacacaaatcacttgtagtcagaatcacttttaaccaaaa 21691160  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 50061633 - 50061558
Alignment:
Q  230 tttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 306  Q
    |||||||||| | || |||||| |||| | ||||||||||||||||||| |||||| ||||| | || |||||||||    
T  50061633 tttatccaaacacaattcactt-tagtcagaatcacttttaaccaaaatcaattctccccactgaactaccaaacac 50061558  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 2099687 - 2099627
Alignment:
Q  225 atgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 285  Q
    |||||| |||||||| | ||||||||| || | ||||| ||||||||||||||| ||||||    
T  2099687 atgaatgtatccaaacacaaatcacttttactcaaaattacttttaaccaaaatcaattct 2099627  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 30557587 - 30557647
Alignment:
Q  225 atgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 285  Q
    |||||| |||||||| | ||||||||| |||| | | ||||||||||||||||| ||||||    
T  30557587 atgaatgtatccaaacacaaatcacttctagtcagagtcacttttaaccaaaatcaattct 30557647  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 34875095 - 34875063
Alignment:
Q  219 ttttgcatgaatttatccaaagaaaaatcactt 251  Q
    ||||||||||||||||||||||| |||||||||    
T  34875095 ttttgcatgaatttatccaaagataaatcactt 34875063  T

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