View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20282_high_1 (Length: 904)
Name: NF20282_high_1
Description: NF20282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20282_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 401 - 885
Target Start/End: Original strand, 5034374 - 5034859
Alignment:
| Q |
401 |
aaatctatattttttgcctaatttatatggctcaattatattacaggaccaccaccaacttaaaatgttctcaacaatctgaccactgctttctattgat |
500 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5034374 |
aaatctacattttttgcctaatttatatggctcaattatattacaggaccaccaccaacttaaaatgttctcaacaatgtgaccactgctttctattgat |
5034473 |
T |
|
| Q |
501 |
tgaatatagcagcagcagcattagaaggaaaaagaagatgagtgcaaagacatgaagtgttaagtcatgaacaatgactatttcaccatgcttggagaag |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5034474 |
tgaatatagcagcagcagcattagaaggaaaaagaagatgagtgcaaagacatgaagtgttaagtcatgaacaatgactatttcaccatgcttggagaag |
5034573 |
T |
|
| Q |
601 |
tttctaatttcatatcaaaatgaatgaaatagatattcggagattcaaccaaattaaaaagatgtgttgaatgttaaacataaaactggtaaaagatttt |
700 |
Q |
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|||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
5034574 |
tttctaatttcacatcaatatgaatgaaatagatatcaggagattcaaccaaattaaaaagatgtattgaatgttaaacataaaactggtaaaagacttt |
5034673 |
T |
|
| Q |
701 |
gaataattattaacattctaagcacataaa-acagattgagtaacaaacgaacatctactagacacaagtttgataataaaatcaagtaagaatataaca |
799 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5034674 |
gaataattattaacattctaagcacataaaggaagattgagtaacaaacgaacatctactagacacaagtttgataataaaatcaagtaagaatataaca |
5034773 |
T |
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| Q |
800 |
tccttatatcatctgaagtagtaaattttccttccagttctgccaaaactatataaaaatcaagtcatctaattcaatgttgtgcg |
885 |
Q |
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| T |
5034774 |
tccttagatcatctgaagtagtaaattttccttccagttctgccaaaactaaataaaaatcaagtcatctaattcaatgttgtgcg |
5034859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 15 - 370
Target Start/End: Original strand, 5034011 - 5034369
Alignment:
| Q |
15 |
cacagacatgtaacacaaatgatcgatacattgggaaatattgtatccagaacctgaacagcacgccttgaattccaaccacagtatcctctcaaaatta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5034011 |
cacagacatgtaacacaaatgatcgatacattgggaaatattgtatccagaacctgaacagcacgccttgaattccaaccacagtatcctctcaaaatta |
5034110 |
T |
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| Q |
115 |
tatctgcctttgtatagttaatgtgtgacaagttaaactgattggccataaaaatgctatagacaaatttgaacaaatcactattatttcaagacacact |
214 |
Q |
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| T |
5034111 |
tatctgcctttgtatagttaatgtgtgacaagttaaactcattggccataaaaatgctatagacaaatttgaacaaatcactattatttcaagacacact |
5034210 |
T |
|
| Q |
215 |
atttatataacaaaactatagcgtggtggaatttgaacaaactgttatctttcactgtccacgagagacaacactagcatagacactagaac---attct |
311 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5034211 |
atttttataacaaaactatagcgtggtggaatttgaacaaactgttatctttcactgtccacgagagacaacactagcatagacactagaacaatattct |
5034310 |
T |
|
| Q |
312 |
ttctgtttatacaaattttatctatacactcatctctaatatcataccatattgatcta |
370 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5034311 |
ttctgtttatacaaattttatctatacactcatctctaatatcataccatattgatcta |
5034369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 25 - 507
Target Start/End: Original strand, 5039670 - 5040142
Alignment:
| Q |
25 |
taacacaaatgatcgatacattgggaaatattgtatccagaacctgaacagcacgccttgaattccaaccacagtatcctctcaaaattatatctgcctt |
124 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5039670 |
taacacaaatgatcaataccttgggaaatattgtatccagaacctgaacagcacgccttgaattccaaccacagtatcctctcaaaattatatctgccta |
5039769 |
T |
|
| Q |
125 |
tgtatagttaatgtgtgacaagttaaactgattggccataaaaatgctatagacaaatttgaacaaatcactattatttcaagacacactatttatataa |
224 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5039770 |
tgtaaagttaatgtgtgacaagttaaactcattggccataaaaatgctatatagaaatttgaacaaatcactattatttcaagacacactatttatataa |
5039869 |
T |
|
| Q |
225 |
caaaactatagcgtggtggaatttgaacaaactgttatctttcactgtccacgagagacaacactagcatagacactagaacattctttctgtttataca |
324 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| | | | || | |||||| |||||||||||||| |
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| T |
5039870 |
c-aaactatagcgtggtggaatttgaacaaactgttatctttcactatctgtgattgacaacactggaaaacactagaaaacattttttctgtttataca |
5039968 |
T |
|
| Q |
325 |
aattttatctatacactcatctctaatatcataccatattgatctagattcagagatt--nnnnnnntcccatcaataaaatctatat---tttttgcct |
419 |
Q |
| |
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|||||| ||||||||||| ||||||||||||||||||||||| ||| | |||| ||| |||| | || |||||| || |
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| T |
5039969 |
aatttt------------atctctaatattgtaccatattgatctagattcagatattaaaaaaaaataccataaattaaatttccatttatttttgtct |
5040056 |
T |
|
| Q |
420 |
aatttatatggctcaattatattacaggaccaccaccaacttaaaatgttctcaacaatctgaccactgctttctattgattgaatat |
507 |
Q |
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|||| ||||| ||||||||||||||||||||||||| || ||||| |||||||||| | |||||||||| ||||||||||||||||| |
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| T |
5040057 |
aatt--tatggttcaattatattacaggaccaccacctacataaaaagttctcaacactgtgaccactgccttctattgattgaatat |
5040142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 508 - 646
Target Start/End: Original strand, 2489345 - 2489483
Alignment:
| Q |
508 |
agcagcagcagcattagaaggaaaaagaagatgagtgcaaagacatgaagtgttaagtcatgaacaatgactatttcaccatgcttggagaagtttctaa |
607 |
Q |
| |
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||||||||||||||| ||||| ||||||||||||||||||||||| | ||||| |||| |||||||||| ||||||||| |||| ||||||||||||| |
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| T |
2489345 |
agcagcagcagcattggaaggtaaaagaagatgagtgcaaagacaagtggtgttgagtcgagaacaatgaccatttcaccaggcttcgagaagtttctaa |
2489444 |
T |
|
| Q |
608 |
tttcatatcaaaatgaatgaaatagatattcggagattc |
646 |
Q |
| |
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||| | |||||||||||||||||||||||| ||||||| |
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| T |
2489445 |
tttaaaatcaaaatgaatgaaatagatatttagagattc |
2489483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 508 - 607
Target Start/End: Original strand, 2524401 - 2524500
Alignment:
| Q |
508 |
agcagcagcagcattagaaggaaaaagaagatgagtgcaaagacatgaagtgttaagtcatgaacaatgactatttcaccatgcttggagaagtttctaa |
607 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| ||||||| | |||| || |||||| ||||||||||||| |
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| T |
2524401 |
agcagcagcagcattagaaggcaaaagaagatgagtgcaaagaaatgaagtgttgagtcaataacaatgtcaatttaactatgcttagagaagtttctaa |
2524500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 807 - 855
Target Start/End: Original strand, 2489582 - 2489630
Alignment:
| Q |
807 |
atcatctgaagtagtaaattttccttccagttctgccaaaactatataa |
855 |
Q |
| |
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||||||||||||||||||||||| ||| |||||||||| |||| ||||| |
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| T |
2489582 |
atcatctgaagtagtaaattttcattcaagttctgccagaactttataa |
2489630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 25096361 - 25096449
Alignment:
| Q |
40 |
atacattgggaaatattgtatccagaacctgaacagcacgccttgaattccaaccacagtatcctctcaaaattatatctgcctttgta |
128 |
Q |
| |
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|||| |||||||| ||||||||||||||||| ||||| ||||||| |||||||||| ||||||||| || || |||||| |||| |||| |
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| T |
25096361 |
ataccttgggaaaaattgtatccagaacctgcacagcgcgccttgtattccaaccagagtatcctcgcagaactatatccgcctatgta |
25096449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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