View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20282_high_12 (Length: 223)
Name: NF20282_high_12
Description: NF20282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20282_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 105 - 212
Target Start/End: Original strand, 1898043 - 1898150
Alignment:
| Q |
105 |
ccatagaatccaaatcctttacaagtaaatatttcttcattacttgttatttaatgggatcatcaaaattttagtactgaaaagtttcagttcctttatt |
204 |
Q |
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| T |
1898043 |
ccatagaatccaaatcctttacaagtaaatatttcttcatttcttgttatttaatgggatcatcaaaattttagtactgaaaagtttcagttcctttatt |
1898142 |
T |
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| Q |
205 |
catctcac |
212 |
Q |
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||| |||| |
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| T |
1898143 |
catttcac |
1898150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 1903369 - 1903450
Alignment:
| Q |
131 |
aaatatttcttcattacttgttatttaatgggatcatcaaaattttagtactgaaaagtttcagttcctttattcatctcac |
212 |
Q |
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| T |
1903369 |
aaatattttttcatttcttgttatttaatgagatcatcaaaattttagtactgaaaagtttcagttcctttattcatttcac |
1903450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 1907602 - 1907683
Alignment:
| Q |
131 |
aaatatttcttcattacttgttatttaatgggatcatcaaaattttagtactgaaaagtttcagttcctttattcatctcac |
212 |
Q |
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| T |
1907602 |
aaatattttttcatttcttgttatttaatgagatcatcaaaattttagtactgaaaagtttcagttcctttattcatttcac |
1907683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 1897964 - 1898013
Alignment:
| Q |
26 |
ttcaatatgaagtatcagtgctacatagtatttactagaatgtataattc |
75 |
Q |
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| T |
1897964 |
ttcaatatgaagtatcagtgctacatagtatttactagaatgtataattc |
1898013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 1880601 - 1880652
Alignment:
| Q |
106 |
catagaatccaaatcctttacaagtaaatatttcttcattacttgttattta |
157 |
Q |
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| T |
1880601 |
catagaatcaatatcctttacaagtaaatatttcttcatttctttttattta |
1880652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 1903301 - 1903344
Alignment:
| Q |
25 |
cttcaatatgaagtatcagtgctacatagtatttactagaatgt |
68 |
Q |
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| T |
1903301 |
cttcaatgtgaagtatcggtgctgcatagtatttactagaatgt |
1903344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 1907534 - 1907577
Alignment:
| Q |
25 |
cttcaatatgaagtatcagtgctacatagtatttactagaatgt |
68 |
Q |
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| T |
1907534 |
cttcaatgtgaagtatcggtgctgcatagtatttactagaatgt |
1907577 |
T |
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