View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20282_high_5 (Length: 417)
Name: NF20282_high_5
Description: NF20282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20282_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 113 - 385
Target Start/End: Complemental strand, 46979384 - 46979112
Alignment:
| Q |
113 |
acgagggagaggggcatatctagagaatgccgttttttatatgagaatgaaaggagcatttattgaccactagatcaaaatagacagttaagattaaaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46979384 |
acgagggagaggggcatatctagagaatgccgttttttatatgagaatgaaaggagcatttattgaccactagatcaaaatagacagttaagattaaaaa |
46979285 |
T |
|
| Q |
213 |
gcctcatttaaataacatacgtgcctctacttagtctattacttttcctaaacacgtttaccttttcatcttcttcgaattcaacctaccttcatctgca |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46979284 |
gcctcatttaaataacatacgtgcctctacttagtctattacttttcctaaacacatttaccttttcatcttcttcgaattcaacctaccttcatctgca |
46979185 |
T |
|
| Q |
313 |
gggaataaacttattttctctagtttttctgcaaatcaattcctcacttcccgcttgtgttttctcattctgc |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46979184 |
gggaataaacttattttctctagtttttctgcaaatcaattcctcacttcccacttgtgttttctcattctgc |
46979112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 46979482 - 46979411
Alignment:
| Q |
19 |
caatcagcttaggaaagttctgttaaatgtcaagggtcacaacgacggagaggtggctcacaagtaatgaag |
90 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46979482 |
caatcagcttagaaaagttctgttaaatgtcaagggtcacaacgacggagaggtggctcacaagtaatgaag |
46979411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University