View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20282_low_11 (Length: 256)
Name: NF20282_low_11
Description: NF20282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20282_low_11 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold1750 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 4714301 - 4714061
Alignment:
| Q |
16 |
aatatgagtgagatgattcataaatcagctatattgaggtttttgatgaagatgtgatgtgaatctcacttttgtgactgatcttagcataatgtgattc |
115 |
Q |
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| T |
4714301 |
aatatgagtgagatgattcataaatcagctatattgaggtttttgatgaagatgtgatgtgaatctcacttttgtgactgatcttagcataatgtgattc |
4714202 |
T |
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| Q |
116 |
caaatataaccggccaatagaaatcaaatgaatgttgacatgactgagagagcgcatggcagtgagatgagaacggtgagagttgtaggtcttggtgggg |
215 |
Q |
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| T |
4714201 |
caaatataaccggccaatagaaatcaaatgaatgttgacatgactgagagagcgcatggcagtgagatgagaacggtgagagttgtaggtcttggtgggg |
4714102 |
T |
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| Q |
216 |
aggacgagagagatgaggaataggagagatataataacaat |
256 |
Q |
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| T |
4714101 |
aggatgagagagatgaggaataggagagatataataacaat |
4714061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 4704150 - 4704015
Alignment:
| Q |
16 |
aatatgagtgagatgattcataaatcagctatattgaggtttttgatgaagatgtgatgtgaatctcacttttgtgactgatcttagcataatgtgattc |
115 |
Q |
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| T |
4704150 |
aatattagtgagatgacccataaatcaactatattaaggtctttgatgaatatgtgatgtgagtcgcgcttttg--actgatcttagcaaaatgtgattc |
4704053 |
T |
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| Q |
116 |
caaatataaccggccaatagaaatcaaatgaatgttga |
153 |
Q |
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| T |
4704052 |
caaatataatcggccaatagaaatcaaatgaatgttga |
4704015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 4701737 - 4701651
Alignment:
| Q |
158 |
actgagagagcgcatggcagtgagatgagaacggtgagagttgtaggtcttggtggggaggacgagagagatgaggaataggagaga |
244 |
Q |
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| T |
4701737 |
actgaaagagcgcatgacaatgagatgagaacggagagagtcgtagatcttggtagggaggacaagagagatcagggataggtgaga |
4701651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1750 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1750
Description:
Target: scaffold1750; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 250 - 200
Alignment:
| Q |
63 |
gaagatgtgatgtgaatctcacttttgtgactgatcttagcataatgtgat |
113 |
Q |
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| T |
250 |
gaagatgtgatgtgaatctcacttctgtgattgttcttagtctaatgtgat |
200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 20934963 - 20934913
Alignment:
| Q |
63 |
gaagatgtgatgtgaatctcacttttgtgactgatcttagcataatgtgat |
113 |
Q |
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| T |
20934963 |
gaagatgtgatgtgaatctcacttatgtgattgttcttagtctaatgtgat |
20934913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 32976437 - 32976387
Alignment:
| Q |
63 |
gaagatgtgatgtgaatctcacttttgtgactgatcttagcataatgtgat |
113 |
Q |
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| T |
32976437 |
gaagatgtgatgtgaatctcacttctgtgattgttcttagtctaatgtgat |
32976387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 20306699 - 20306649
Alignment:
| Q |
63 |
gaagatgtgatgtgaatctcacttttgtgactgatcttagcataatgtgat |
113 |
Q |
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| T |
20306699 |
gaagatgtgatgtgaatctcacttctgtgattgttcttagtctaatgtgat |
20306649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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