View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20282_low_14 (Length: 212)
Name: NF20282_low_14
Description: NF20282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20282_low_14 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 212
Target Start/End: Complemental strand, 1898308 - 1898101
Alignment:
| Q |
5 |
agaagcaaaggagataagtgagagattcagtcctattttccaagcacttgcatttggaactgataacaaagctacaactatagatatgatggtggcagtt |
104 |
Q |
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| T |
1898308 |
agaaacaatggagataagtgagagattcagtcctattttccaagcacttgcatttggaactgataacaaagctacaactatagatatgatggtggcagtt |
1898209 |
T |
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| Q |
105 |
gtggtgtaaagcaaggttagagttagttcatctgggaactctttcatgatatgtacctgtgaaatgaataaaggaactgaaaatttttagtactaaaatt |
204 |
Q |
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| T |
1898208 |
gtggtgtaaagcaaggttagagttagttcatctgggaactctttcatgatatgtacctgtgaaatgaataaaggaactgaaacttttcagtactaaaatt |
1898109 |
T |
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| Q |
205 |
ttgatgat |
212 |
Q |
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|||||||| |
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| T |
1898108 |
ttgatgat |
1898101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 1903592 - 1903401
Alignment:
| Q |
21 |
agtgagagattcagtcctattttccaagcacttgcatttggaactgataacaaagctacaactatagatatgatggtggcagttgtggtgtaaagcaagg |
120 |
Q |
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| T |
1903592 |
agtgagagattcaatcctattttccaagcacttgcttttggaactgataacaaagctacaactatagatatgatggtggcagttgtggagtaaaacaata |
1903493 |
T |
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| Q |
121 |
ttagagttagttcatctgggaactctttcatgatatgtacctgtgaaatgaataaaggaactgaaaatttttagtactaaaattttgatgat |
212 |
Q |
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| T |
1903492 |
ttatagttagttcatctgggaactctttcaagatatgtacctgtgaaatgaataaaggaactgaaacttttcagtactaaaattttgatgat |
1903401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 1907825 - 1907634
Alignment:
| Q |
21 |
agtgagagattcagtcctattttccaagcacttgcatttggaactgataacaaagctacaactatagatatgatggtggcagttgtggtgtaaagcaagg |
120 |
Q |
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| T |
1907825 |
agtgagagattcaatcctattttccaagcacttgcttttggaactgataacaaagctacaactatagatatgatggtggcagttgtggagtaaaacaata |
1907726 |
T |
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| Q |
121 |
ttagagttagttcatctgggaactctttcatgatatgtacctgtgaaatgaataaaggaactgaaaatttttagtactaaaattttgatgat |
212 |
Q |
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| T |
1907725 |
ttatagttagttcatctgggaactctttcaagatatgtacctgtgaaatgaataaaggaactgaaacttttcagtactaaaattttgatgat |
1907634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 5 - 186
Target Start/End: Complemental strand, 1913683 - 1913502
Alignment:
| Q |
5 |
agaagcaaaggagataagtgagagattcagtcctattttccaagcacttgcatttggaactgataacaaagctacaactatagatatgatggtggcagtt |
104 |
Q |
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| T |
1913683 |
agaaacaatggagataagtgagagatttagtcctattatccaagcacttgaatttggaactgataacaaagctacaactgtagatatgattgtggcagtt |
1913584 |
T |
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| Q |
105 |
gtggtgtaaagcaaggttagagttagttcatctgggaactctttcatgatatgtacctgtgaaatgaataaaggaactgaaa |
186 |
Q |
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| T |
1913583 |
atggaatatatcaagactaaagttagttcatctgggaactctttcaagatatgtacctgtgaaatgaaaaaaataactgaaa |
1913502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 1880825 - 1880661
Alignment:
| Q |
15 |
gagataagtgagagattcagtcctattttccaagcacttgcatttggaactgataacaaagctacaactatagatatgatggtggcagttgtggtgtaaa |
114 |
Q |
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| T |
1880825 |
gagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacaactgttgatatgatggtagcagttatggtgtata |
1880726 |
T |
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| Q |
115 |
gcaaggttagagttagttcatctgggaactctttcatgatatgtacctgtgaaatgaataaagga |
179 |
Q |
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| T |
1880725 |
acaagactaaagttacttcatctgagaactctttcaagatatgcacctgtgaaatgaatatagga |
1880661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 5 - 204
Target Start/End: Complemental strand, 1888131 - 1887932
Alignment:
| Q |
5 |
agaagcaaaggagataagtgagagattcagtcctattttccaagcacttgcatttggaactgataacaaagctacaactatagatatgatggtggcagtt |
104 |
Q |
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|||| ||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| |||||||||||| |
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| T |
1888131 |
agaaacaatggagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacaactgttgataagatggtggcagta |
1888032 |
T |
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| Q |
105 |
gtggtgtaaagcaaggttagagttagttcatctgggaactctttcatgatatgtacctgtgaaatgaataaaggaactgaaaatttttagtactaaaatt |
204 |
Q |
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| T |
1888031 |
atggagtaaagcaagactaatgttggttcatctgggaactctttcaaaacatgtacctatgaaatgaatatagaaactaaaactctttagaactaaaatt |
1887932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 1892979 - 1892805
Alignment:
| Q |
5 |
agaagcaaaggagataagtgagagattcagtcctattttccaagcacttgcatttggaactgataacaaagctacaactatagatatgatggtggcagtt |
104 |
Q |
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|||| ||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||| |
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| T |
1892979 |
agaaacaatggagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacaactgttgatatgatggtggcagta |
1892880 |
T |
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| Q |
105 |
gtggtgtaaagcaaggttagagttagttcatctgggaactctttcatgatatgtacctgtgaaatgaataaagga |
179 |
Q |
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| T |
1892879 |
atggtgtataacaagactaaagttacttcgtcagggaactctttcaagatatgcacctgtgaaatgaatatagga |
1892805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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