View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20282_low_3 (Length: 590)
Name: NF20282_low_3
Description: NF20282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20282_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Original strand, 1245758 - 1246341
Alignment:
| Q |
1 |
gcattcacttccacaaaacatggaggcgaggaagttggataaagggaagaaaattctaatgcctagtattagtagcctttttcctaggnnnnnnngcttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1245758 |
gcattcacttccacaaaacatggaggcgaggaagttggataaagggaagaaaattctaatgcctagtattagtagcctttttcctaggaaaaaaagcttg |
1245857 |
T |
|
| Q |
101 |
caggttgagagaggacttccttcttaccttccaggtgagactcctttgtgaaaaatttgttctaattttgtgagagtagcatgttgatttatgtgagagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245858 |
caggttgagagaggacttccttcttaccttccaggtgagactcctttgtgaaa--tttgttctaattttgtgagagtagcatgttgatttatgtgagagt |
1245955 |
T |
|
| Q |
201 |
agagttctatgctatcagatttttgtcttcatcatagagtatgagggaaatgaattttgaaatatcagtagtttggtaacaaattcaggttgaatgttgc |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245956 |
agagttctatgctatcagatttttgtcttcatcatagagtatgagggaaatgaattttgaaatatcagtagtttggtaacaaattcaggttgaatgttgc |
1246055 |
T |
|
| Q |
301 |
agtagattattgttgctgaattttgaggtttcatgttttgtagtctgataaactttttgcaacaagcattatgatgataataagcatttggaaaaattgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1246056 |
agtagattattgttgctgaattttgaggtttcatgttttgtagtttgataaactttttgcaacaagcattatgatgataataagcatttggaaaaattgt |
1246155 |
T |
|
| Q |
401 |
attcttttttgtcttattctatataatctatcattcatataatttcttgatgctttactcctaaattcctgataaagataaggagagacattgcttgaag |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1246156 |
attcttttttgtcttattctatataatctatcattcatataatttcttgatgctttactcctaaattcctgataaagataaggagagacattgcttgaag |
1246255 |
T |
|
| Q |
501 |
caatttctactggcagaacaagaaattatcaaattaaaaatatatttcacattaagaaaatcaagataaagataatttgataattt |
586 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1246256 |
caatttctactggcagaacaagaaattatcaaattaaaaatatatttcacattaagaaaatcaagagaaagataatttgataattt |
1246341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Original strand, 42010420 - 42011002
Alignment:
| Q |
1 |
gcattcacttccacaaaacatggaggcgaggaagttggataaagggaagaaaattctaatgcctagtattagtagcctttttcctaggnnnnnnngcttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |
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| T |
42010420 |
gcattcacttccacaaaacatggaggcgaggaagttggaaaaagggaagaaaattctattgcctagtattagtagcttttttcctaggaaaaaaagcttg |
42010519 |
T |
|
| Q |
101 |
caggttgagagaggacttccttcttaccttccaggtgagactcctttgtgaaaaatttgttctaattttgtgagagtagcatgttgatttatgtgagagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010520 |
caggttgagagaggacttccttcttaccttccaggtgagactcctttgtgaaa--tttgttctaattttgtgagagtagcatgttgatttatgtgagagt |
42010617 |
T |
|
| Q |
201 |
agagttctatgctatcagatttttgtcttcatcatagagtatgagggaaatgaattttgaaatatcagtagtttggtaacaaattcaggttgaatgttgc |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42010618 |
agagttttatgctatcagatttttgtcttcatcatagagtatgagggaaatgatttttgaaatatcagtagtttggtaacaaattcagattgaatgttgc |
42010717 |
T |
|
| Q |
301 |
agtagattattgttgctgaattttgaggtttcatgttttgtagtctgataaactttttgcaacaagcattatgatgataataagcatttggaaaaattgt |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42010718 |
agtagattattgttgctgaattttgaggtttcatgttttatagtttgataaactttttgcaacaagcattatgatgataataagcatttgg-aaaattgt |
42010816 |
T |
|
| Q |
401 |
attcttttttgtcttattctatataatctatcattcatataatttcttgatgctttactcctaaattcctgataaagataaggagagacattgcttgaag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42010817 |
attcttttttgtcttattctatataatctatcattcatataatttcttgatgctttactcctaaattcctgataaagataaggagagacattgcttgaag |
42010916 |
T |
|
| Q |
501 |
caatttctactggcagaacaagaaattatcaaattaaaaatatatttcacattaagaaaatcaagataaagataatttgataattt |
586 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42010917 |
caatttctactggcagaacaagaaattatcaaattaaaaatatatttcacattaagaaaatcaagagaaagataatttgataattt |
42011002 |
T |
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