View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20282_low_6 (Length: 365)
Name: NF20282_low_6
Description: NF20282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20282_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 42014428 - 42014603
Alignment:
| Q |
1 |
aaagttctcttgttggtactgttcagttgtacgaacgacacgtgtttctttgttataagaatcccaggttttggcctcctaggattgaagctgctgagtt |
100 |
Q |
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| T |
42014428 |
aaagttctcttgttggtactgttgagttgtacgaacgacacgtgtttctttgttataagaatcccaggttttggcctcctaggattgaagctgctgagtt |
42014527 |
T |
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| Q |
101 |
tgatcggttgcctaggttgctttatgctgctgttaaagctaggaagaatcatatgaagaaggaggtagtaaaagtt |
176 |
Q |
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| T |
42014528 |
tgatcggttgcctaggttgctttatgctgctgttaaagctaggaagaatcatatgaagaaggaggtagtaaaagtt |
42014603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 42014953 - 42014993
Alignment:
| Q |
310 |
gggggtgatgaattgtaaatgaatgatatttgtgaggtttt |
350 |
Q |
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| T |
42014953 |
gggggtgatgaattgtaaatgaatgatatttgtgaggtttt |
42014993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 1247656 - 1247831
Alignment:
| Q |
1 |
aaagttctcttgttggtactgttcagttgtacgaacgacacgtgtttctttgttataagaatcccaggttttggcctcctaggattgaagctgctgagtt |
100 |
Q |
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| T |
1247656 |
aaagttctcttgttggtactgttgagttgtacgaacgacacgtgtttctatgttataagaatcccagattttggcctcctaggattgaagctgctgagtt |
1247755 |
T |
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| Q |
101 |
tgatcggttgcctaggttgctttatgctgctgttaaagctaggaagaatcatatgaagaaggaggtagtaaaagtt |
176 |
Q |
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| T |
1247756 |
tgatcggttgcctaggttgctttatgctgctgttaaagctaggaagaatcatatgaagaaggaggtagtaaaagtt |
1247831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 1248181 - 1248221
Alignment:
| Q |
310 |
gggggtgatgaattgtaaatgaatgatatttgtgaggtttt |
350 |
Q |
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| T |
1248181 |
gggggtgatgaattgtaaatgaatgatatttgtgaggtttt |
1248221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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