View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20283_high_3 (Length: 341)
Name: NF20283_high_3
Description: NF20283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20283_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 37428804 - 37428482
Alignment:
| Q |
1 |
tgccctcagcaaggggctcatatggaagttgaacattcaggtcaaaatctaaagtggcaagtaacaccctctctccaagtaaaattaattctttctgctg |
100 |
Q |
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| T |
37428804 |
tgccctcagcaaggggctcatacggaagttgaacattcaggtaaaaatctaaagtggcaagtaacaccctctctccaagtaaaattaattctttctgctg |
37428705 |
T |
|
| Q |
101 |
ctcatacacttcctgcatcatttacaaatcacagaaataaatataataagggttatggaaagagagtgcaacggttggacaggggcggacccaaccatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37428704 |
ctcatacacttcctgcatcatttacaaatcacagaaataaatataataagggttatggaaagagagtgcaacggttggacaggggcggacccaaccatac |
37428605 |
T |
|
| Q |
201 |
ttgagggtaggaacttacacccctcaaaaagcaaattattaattccctaaagatggtaaaatctgttaaactagtttctaaaattctaagaaacttgtca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
37428604 |
ttgagggtaggaacttacacccctcaaaaagcaaattattaattccctaaagatggtaaaatctgtcaaattagtttctaaaattctaagaaacttgtca |
37428505 |
T |
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| Q |
301 |
ttaatctctataagggtctgttt |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
37428504 |
ttaatctctataagggtctgttt |
37428482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 37436361 - 37436478
Alignment:
| Q |
11 |
aaggggctcatatggaagttgaacattcaggtcaaaatctaaagtggcaagtaacaccctctctccaagtaaaattaattctttctgctgctcatacact |
110 |
Q |
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||||||| ||||||| |||||||| | ||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37436361 |
aaggggcccatatggttcttgaacatcgaagtcaaaacctaaagtggcaagtacaaccctttctccaagtaaaattaattctttctgctgctcatacact |
37436460 |
T |
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| Q |
111 |
tcctgcatcatttacaaa |
128 |
Q |
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| T |
37436461 |
tcctgcatcatttacaaa |
37436478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 32505359 - 32505244
Alignment:
| Q |
10 |
caaggggctcatatggaagttgaacattcaggtcaaaatctaaagtggcaagtaacaccctctctccaagtaaaattaattctttctgctgctcatacac |
109 |
Q |
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||||||||| ||||||| |||| ||||||| ||||||| | ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32505359 |
caaggggcttatatggatgttggacattcaagtcaaaagccaaagtggcaagtacaaccctctctccaagtaaaattaactctttctgctgctcatacac |
32505260 |
T |
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| Q |
110 |
ttcctgcatcatttac |
125 |
Q |
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||||| |||||||||| |
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| T |
32505259 |
ttcctacatcatttac |
32505244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 28518056 - 28518007
Alignment:
| Q |
66 |
accctctctccaagtaaaattaattctttctgctgctcatacacttcctg |
115 |
Q |
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||||||||| |||||| ||||||||| ||||||||||||||||||||||| |
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| T |
28518056 |
accctctctgcaagtagaattaattccttctgctgctcatacacttcctg |
28518007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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