View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20283_high_4 (Length: 250)
Name: NF20283_high_4
Description: NF20283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20283_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 12824756 - 12824520
Alignment:
| Q |
1 |
tacaagagtttttgctagagtttacaatggtggaagcttgctccaaatacaaagatacaagccgatttgtaggaactaggggtacgagtttccgccattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
12824756 |
tacaagagtttttgctagagtttacaatggtggaagcttggtccaaatacaaagatacatgccgatttgtaggaactaggggtacgagttcctgccattt |
12824657 |
T |
|
| Q |
101 |
cttgtagttacaaggctaagtgtaaaatatttcaacaaatgcaatattttcatcatagttccaccattttatatttcctatttattgaaaataaaacata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12824656 |
cttgtagttacaaggctaagtgtaaaatatttcaacaaatgcaatattttcatcatagttccaccattttatatttcctatttattgaaaataaaacata |
12824557 |
T |
|
| Q |
201 |
aagtagtaaaatgctcctatttattggatcacactct |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12824556 |
aagtagtaaaatgctcctatttattggatcacactct |
12824520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 41390954 - 41390990
Alignment:
| Q |
176 |
tcctatttattgaaaataaaacataaagtagtaaaat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41390954 |
tcctatttattgaaaataaaacataaagttgtaaaat |
41390990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University